Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g00306 GCTCTTGAATTTGAGTTACCAAAAAGGTCGTTGCTTTTCTCCAATTACTGTGCTCTCTCAGTATGAGAATCGCTCAACAACTGAATTGACTCTTCAATTCTTCTCTTTCTCTTTCTGTTTTTCCTTTTTTCCCAGATTCTCAGCGGGTGTTTCCTGAATCTAGGGCTTTGGATTTCCAGAATTTTCCATCCAAGTATGCAGTCAAAGTCTAAAAGCGTGAATCAACTAGAATCTGAACCACCAAATATGCAGCAGACTAGTGGTTATACTGAACCTTGGTGGCGTAGTATTGGGTACAATCATATCTCCCCGCCAGCAGGAGGAAATTTGTCCAATTCAACGTCACTGGAATGCACTAATGGTGCTTCAGAATCTAATGATGGTCAGTCAATGTCAAATGATGATTTAAATGAAGACGATGATGATGACACCACAAAAGATTCACATGCAAGTTATGGGCAAGTACAGCACAACTGTCAGCTTGCTGTTTCTGCTGCGCCTACAGTGCATGGTGGATGTGTCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTATGCTGGAGTGATGGCTGCCTATGGGCATCAACCGGGTTATCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGACACAAGAGCCTGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAAAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGAGGACGGTTTGCCAAGAAAAATGAAGCTAATTCCTTGAGTTCAACAATGAAGGACAAGGACTCCGCTTCTGGTCAAGCTATCTCATCGCACTCTGCTGGTTCATCTGGTTCTGAAGCAGCGCCTTGTGCCTTGGCTGAAACCTGGAATTCTTCCAGTGGACAACAAGAAGCAAGGACCCAGTTGCATGAGGCATATGAAGCTCGAAGTTATGTGAACCACGGTAGCCAATTTCACAACTACAGTAGCTTCCAAGCTTCTTCATACGGTTTACGGTCTGGTGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAGCGAAGTATCTCAGAAAATCAGGCTGGACAGAGGCGTCTTGCCATCAAGTGAACCTCCTGGTTGCAAAAATATGGGGTGCCCCTAGGTTATCTTTGGGGCTGCATTCCCTGGCAGTTTTCTGCTAGGCGGCAAATCATTCTTGGCTTTGTTCTGGTGCTTGTTTCTTAATCGTAAAGGAGATGGATGATATAAGTTGGCCATTTGGACCCTAGTTCTAGATGCTTCATTCCATCAACCTCTCCCCCATTTTTAACTTGTGTATAGAACAGACTCCATAGATTTCAAACAGTGCTCTTTTTAATTTCCAAACCACCTTGCTTAATCGAATGCATAACTGTCATGTACTCGTGAGTGTGTCTAGAACTTTGATCCATAATTTGGTTGCTAATTTCATCAAAGTTTCCTCAGTACCAAATATATTTCTTGCTCTA 1598 43.93 MQSKSKSVNQLESEPPNMQQTSGYTEPWWRSIGYNHISPPAGGNLSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQLAVSAAPTVHGGCVTQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNEANSLSSTMKDKDSASGQAISSHSAGSSGSEAAPCALAETWNSSSGQQEARTQLHEAYEARSYVNHGSQFHNYSSFQASSYGLRSGERGEDGDCSGQQRSISENQAGQRRLAIK 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6542622 6547790 - XM_039045659.1 Bhi10g00306 46647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g00306 340 ProSitePatterns NF-YA/HAP2 subunit signature. 170 190 IPR018362 GO:0003677|GO:0016602
Bhi10g00306 340 Gene3D - 165 227 - -
Bhi10g00306 340 SMART cbf3 164 225 IPR001289 GO:0003700|GO:0006355
Bhi10g00306 340 MobiDBLite consensus disorder prediction 1 28 - -
Bhi10g00306 340 MobiDBLite consensus disorder prediction 225 255 - -
Bhi10g00306 340 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 30 327 IPR001289 GO:0003700|GO:0006355
Bhi10g00306 340 PRINTS CCAAT-binding transcription factor subunit B signature 168 190 IPR001289 GO:0003700|GO:0006355
Bhi10g00306 340 PRINTS CCAAT-binding transcription factor subunit B signature 199 222 IPR001289 GO:0003700|GO:0006355
Bhi10g00306 340 MobiDBLite consensus disorder prediction 307 340 - -
Bhi10g00306 340 MobiDBLite consensus disorder prediction 205 259 - -
Bhi10g00306 340 MobiDBLite consensus disorder prediction 40 67 - -
Bhi10g00306 340 ProSiteProfiles NF-YA/HAP2 family profile. 165 225 IPR001289 GO:0003700|GO:0006355
Bhi10g00306 340 MobiDBLite consensus disorder prediction 1 85 - -
Bhi10g00306 340 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 30 327 - -
Bhi10g00306 340 MobiDBLite consensus disorder prediction 205 219 - -
Bhi10g00306 340 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 167 222 IPR001289 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g00306 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - csv:101212961 613.994
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g00303 Bhi-Chr10:6542622 Bhi10g00306 Bhi-Chr10:6542622 0 dispersed
Bhi10g00304 Bhi-Chr10:6542622 Bhi10g00306 Bhi-Chr10:6542622 0 dispersed
Bhi10g00306 Bhi-Chr10:6542622 Bhi11g02361 Bhi-Chr11:64353269 4.20E-30 dispersed
Bhi10g00305 Bhi-Chr10:6542622 Bhi10g00306 Bhi-Chr10:6542622 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi10g00303 CCT,ECH 18 228 CCAAT-HAP2 Transcription Factor Family AT5G12840 55.0 4.2e-52 202.6
Bhi10g00306 . 18 228 CCAAT-HAP2 Transcription Factor Family AT5G12840 55.0 4.2e-52 202.6
Bhi10g00302 . 18 228 CCAAT-HAP2 Transcription Factor Family AT5G12840 55.0 4.2e-52 202.6
Bhi10g00304 . 18 228 CCAAT-HAP2 Transcription Factor Family AT5G12840 55.0 4.2e-52 202.6
Bhi10g00305 . 18 223 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.2 2.5e-49 193.4
Bhi10g00303 CCT,ECH 103 340 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.6 2.0e-47 187.2
Bhi10g00306 . 103 340 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.6 2.0e-47 187.2
Bhi10g00302 . 103 340 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.6 2.0e-47 187.2
Bhi10g00304 . 103 340 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.6 2.0e-47 187.2
Bhi02g01538 CCT,ECH 58 231 CCAAT-HAP2 Transcription Factor Family AT3G20910 60.8 9.3e-45 178.3
Bhi03g00154 . 1 203 CCAAT-HAP2 Transcription Factor Family AT1G30500 55.2 7.9e-50 194.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001124 3 6 3 3 3 2 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 1 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2099 PF02045 CBFB_NFYA 1.90E-26 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi10g00306 Bhi_Chr10 FPKM 0.215136 0.0 0.0 0.0 0.925911 1.43064 1.000822 0.0 0.0 0.0