Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g00386 TCAGCATTGTGTTATCAGTGTGCTGCATTTTGGTTATGTTCATGCCTGTTGAACGATTTTGAAACCATGGTGAATTTGTCTGTTGCTTTTCCTTCTTGATTCTTAACTGAAGTGGTTTAGATGGGTAAATGCTGGCTTCTAGTTTTAAACAGAGAGATGATTGTATGACTACCGTAGAATTCAGAGAGAAGGGGATGTATCAGCAGCAGAAGTCAAGGGAAGAACATGCTTTTTCTGCAGCCAGCTTCTGCAAAGAAGTGACTGAGTTGCGCCTTACATCGATAGATTCTCAAGCAGCAACTTCTCGTCCAGAGTTCAAAGGTATCACTTTCAGGAAAGCTTCAACTGGTGGTTTTGCCAGGAGTCGTAATGATGTACACGAGTTACTCGATTGTACTGTTTGCATGAATTTAATGCATCCTCCAATTTACCAGTGTGCAAATGGGCACACTCTTTGTTCAAGCTGCAAGGCAAGGATTCAGAACTGTTGCCCTACCTGCCGGCATGAGCTTGGAAACATAAGGTGCCTAGCACTGGAAAAGGTGGCCGAGTCACTCGAGCTCCCTTGTGTGTACCAAAACCTAGGTTGCATTGACATGTTCCCATACTACAGCAAGCTTAAACATGAGAAGAACTGTAAATACCGGCCATACAACTGCCCTTACGCCGGAGGTGAATGTCGTGTAACTGGTGATATTCCATACCTTGTCATGCATCTCAAGGACGATCACGAGGTCGATATGCATGATGGATGTTCCTTCAGCCATAGATACGTCAAATCCAATCCACAAGAAGTTGAAAATGCTACATGGATGCTTACTGTTTTTAACTGCTTTGGACGACAATTCTGTTTGCACTTTGAAGCGTTTCGATTAGGAACAGCACCTGTTTACATGGCATTCCTCCGGTTCATGGGTGATGATGACGATGCAAAACAATTTTCTTACAGTCTGGAAGTTGGTGGAAATGGAAGAAAACTCATTTGGCAAGGTATTCCGAGAAGTATCCGCGATAGCCATCGGAAGGTTCGAGACAGTCACGATGGACTAATCATTCAGAGGAAATTGGCACTATTCTGCTCTGGAAATGAGGGAATGGAACTGAAGCTAAAGGTTACAGGCCGAATATGGAGAGTGAGTTTTTTTCTGAAGAAAAAAGTTACAAGTGTGTCTGATGAATAACAAGACAAAAGAAAGAAGAGCAAGAGCAGGGAGCGAGAAAATGATAAGAAGAATATAAATAAATGAAAAGAAATTGTTGTCTTATGAGGATGAAGACAAAGGAGGGGGGAGTGGAAGCAAAGCATAAATGGGGAGTTAAAAATAGGTCCTCACACGCGTTTTGAGGTCAAATGGGTACTTTCACATGTGAATGACTTCAGTAGAAGGCCAAATTTCAAATGTTTTTTTAAAATGAGGTCAAATTTGGAGTGGCCCCTATACAAATCCCCTGATATATTACATGTAATACAATTGAGTTAATATTCTAATACAAAAGTTCCCTTTATTGGCCTTTCTTAGAAA 1523 41.43 MLASSFKQRDDCMTTVEFREKGMYQQQKSREEHAFSAASFCKEVTELRLTSIDSQAATSRPEFKGITFRKASTGGFARSRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARIQNCCPTCRHELGNIRCLALEKVAESLELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECRVTGDIPYLVMHLKDDHEVDMHDGCSFSHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKQFSYSLEVGGNGRKLIWQGIPRSIRDSHRKVRDSHDGLIIQRKLALFCSGNEGMELKLKVTGRIWRVSFFLKKKVTSVSDE 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8971291 8975175 + XM_039044455.1 Bhi10g00386 46727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g00386 350 SUPERFAMILY RING/U-box 72 129 - -
Bhi10g00386 350 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 38 335 - -
Bhi10g00386 350 Pfam Seven in absentia protein family 131 330 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bhi10g00386 350 ProSiteProfiles Zinc finger RING-type profile. 89 125 IPR001841 -
Bhi10g00386 350 ProSiteProfiles Zinc finger SIAH-type profile. 142 202 IPR013010 GO:0008270
Bhi10g00386 350 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 199 330 IPR008974 GO:0005515
Bhi10g00386 350 SUPERFAMILY TRAF domain-like 142 333 - -
Bhi10g00386 350 CDD RING-HC_SIAHs 87 125 - -
Bhi10g00386 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 197 IPR013083 -
Bhi10g00386 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 141 IPR013083 -
Bhi10g00386 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 38 335 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g00386 Bhi-Chr10:8971291 Bhi06g01005 Bhi-Chr6:27565709 3.48E-155 dispersed
Bhi10g00385 Bhi-Chr10:8971258 Bhi10g00386 Bhi-Chr10:8971291 0 tandem
Bhi10g00386 Bhi-Chr10:8971291 Bhi10g00387 Bhi-Chr10:8971291 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g00386 K04506 - csv:101213438 665.996