Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g00387 TCAGCATTGTGTTATCAGTGTGCTGCATTTTGGTTATGTTCATGCCTGTTGAACGATTTTGAAACCATGGTGAATTTGTCTGTTGCTTTTCCTTCTTGATTCTTAACTGAAGTGGTTTAGATGGGTAAATGCTGGCTTCTAGTTTTAAACAGAGAGATGATTGTATGACTACCGTAGAATTCAGAGAGAAGGGGATGTATCAGCAGCAGAAGTCAAGGGAAGAACATGCTTTTTCTGCAGCCAGCTTCTGCAAAGAAGTGACTGAGTTGCGCCTTACATCGATAGATTCTCAAGCAGCAACTTCTCGTCCAGAGTTCAAAGGTATCACTTTCAGGAAAGCTTCAACTGGTGGTTTTGCCAGGAGTCGTAATGATGTACACGAGTTACTCGATTGTACTGTTTGCATGAATTTAATGCATCCTCCAATTTACCAGTGTGCAAATGGGCACACTCTTTGTTCAAGCTGCAAGGCAAGGATTCAGAACTGTTGCCCTACCTGCCGGCATGAGCTTGGAAACATAAGGTGCCTAGCACTGGAAAAGGTGGCCGAGTCACTCGAGCTCCCTTGTGTGTACCAAAACCTAGGTTGCATTGACATGTTCCCATACTACAGCAAGCTTAAACATGAGAAGAACTGTAAATACCGGCCATACAACTGCCCTTACGCCGGAGGTGAATGTCGTGTAACTGGTGATATTCCATACCTTGTCATGCATCTCAAGGACGATCACGAGGTCGATATGCATGATGGATGTTCCTTCAGCCATAGATACGTCAAATCCAATCCACAAGAAGTTGAAAATGCTACATGGATGCTTACTGTTTTTAACTGCTTTGGACGACAATTCTGTTTGCACTTTGAAGCGTTTCGATTAGGAACAGCACCTGTTTACATGGCATTCCTCCGGTTCATGGGTGATGATGACGATGCAAAACAATTTTCTTACAGTCTGGAAGTTGGTGGAAATGGAAGAAAACTCATTTGGCAAGGTATTCCGAGAAGTATCCGCGATAGCCATCGGAAGGTTCGAGACAGTCACGATGGACTAATCATTCAGAGGAAATTGGCACTATTCTGCTCTGGAAATGAGGGAATGGAACTGAAGCTAAAGGTTACAGGCCGAATATGGAGAGTGAGTTTTTTTCAGAAGCAAAAAGTTGCAGGTGTGTCAGATGAAGAATAAGACAAAGGAGAAAGGAGCGGGAGCGGGGAGCGAGAAAATGAGAGGAAGAATCTGAACAAATGAAATGAAAAATGGAACAAAAGATTGTTGTTGTGTCTTATCAGGATAAGATAAAGGAGCGGGGAGAGGGATTGAGGAGCGTGAGCGGGAGTGAGCAGCTAGAAAGACTATTTTCCTTTTTCCTTCTCCAACAATTTCTA 1384 43.42 MLASSFKQRDDCMTTVEFREKGMYQQQKSREEHAFSAASFCKEVTELRLTSIDSQAATSRPEFKGITFRKASTGGFARSRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARIQNCCPTCRHELGNIRCLALEKVAESLELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECRVTGDIPYLVMHLKDDHEVDMHDGCSFSHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKQFSYSLEVGGNGRKLIWQGIPRSIRDSHRKVRDSHDGLIIQRKLALFCSGNEGMELKLKVTGRIWRVSFFQKQKVAGVSDEE 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8971291 8974740 + XM_039044454.1 Bhi10g00387 46728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g00387 351 SUPERFAMILY RING/U-box 72 129 - -
Bhi10g00387 351 Pfam Seven in absentia protein family 131 330 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bhi10g00387 351 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 38 335 - -
Bhi10g00387 351 ProSiteProfiles Zinc finger RING-type profile. 89 125 IPR001841 -
Bhi10g00387 351 ProSiteProfiles Zinc finger SIAH-type profile. 142 202 IPR013010 GO:0008270
Bhi10g00387 351 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 199 330 IPR008974 GO:0005515
Bhi10g00387 351 SUPERFAMILY TRAF domain-like 142 333 - -
Bhi10g00387 351 CDD RING-HC_SIAHs 87 125 - -
Bhi10g00387 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 197 IPR013083 -
Bhi10g00387 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 141 IPR013083 -
Bhi10g00387 351 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 38 335 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g02659 Bhi-Chr3:66206047 Bhi10g00387 Bhi-Chr10:8971291 6.32E-170 dispersed
Bhi03g02660 Bhi-Chr3:66206047 Bhi10g00387 Bhi-Chr10:8971291 6.32E-170 dispersed
Bhi10g00384 Bhi-Chr10:8971014 Bhi10g00387 Bhi-Chr10:8971291 0 dispersed
Bhi10g00385 Bhi-Chr10:8971258 Bhi10g00387 Bhi-Chr10:8971291 0 dispersed
Bhi10g00387 Bhi-Chr10:8971291 Bhi06g01005 Bhi-Chr6:27565709 3.24E-155 dispersed
Bhi10g00386 Bhi-Chr10:8971291 Bhi10g00387 Bhi-Chr10:8971291 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g00387 K04506 - csv:101213438 665.996