Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g00490 AGGGGAGAGAGAGAGTTTGAAGAAGCGGATAGGAAGGCTCTGGTTGTCCAGAGGAAGAGAGAGGAAGAGAGGATCTTTTTATTTACATCTGTTGTTGTAACGTTGAATTCTCTCTCTTTCTGTCTCTTGTTCGCGTCGGCACTCCTCCCGTTCCTCTTTTCCGCTTCCACCCAATTCAATTCAAATCGCCGTTTCCTATCGGAGCGAACGCACAGATTCCTGGAATTCCTCAACCTACGCTTCGGCTTTCAACTATCGCTTCCGGCGACTTTTTATCCTTTTCTTTTGATGGTTGACCCTTGACCGGGGGATCTGGGATCTGTCTAGATCGATCTGTGTAGAGTTTTCCAAGTTTTTGCGCATTCCACATCTCACATCTGATCGAACGGATTTTTTCTTCCTTTTCCGCGATCAGCTAGCTACATATACGATTTGTGATCATTCTGTTCTCTTTCTTCCTTGGTAACAGAAATAGAATAGCAGAAGGCTGGGTTTCTTGCTAATACAATACATAGAGGATGGACGAGTTAATTGCAACGAGATATTGGTGTCACATGTGTTCTCAAATGGTGAATCCCATCGTTGACGTTGAAATTAAATGCCCCTTCTGCCGTAGCGGCTTTGTCGAGGAGATAGGTAACGGTATATCCAACGACAATAATGATAACAACAGCAATAATAATGAGCTCGAATCCGATTTTGGATCGGAGCGAGCTTTGTCCCTCTGGGCTCCGATCTTGCTCGGTATGATGGGAAATCCCCGTGGGCGCCGAAGATTCAGACATCTAGAGTTTGACGAAGATGATGATGATAATGAGCATGAGGATGGGGAGGGGAATCGTGTGAGTAGTGAGCCGACTGATCTTGATTCAGTCATTAGGAGGAGGAGAAGTTCAGCTACCATTCTTCAGTTGCTCCAAGGTATCAGAGCTGGAATGGCAACTGCTGAATCAGAAAATAGTTACGAGGGAGAGAGGAGCAGAGAAAGAGAGCGGGTTATTCTTATAAATCCTTTCAATCAGACCATTGTAGTTCAAGGAGGTGAGAATCAAAATCAAAACCCCATTGGATCGCTGGGTGATTATTTCGTAGGACCTGGTTTGGATTTGTTATTGCAACATCTAGCCGAAAATGATCCCAACCGATATGGCACTCCACCAGCACAGAAGGAGGCAGTTGATGCACTGCCCACCGTGAGGGTTGAACCTGTGGATAGCTGTTTGCAATGTGCAGTGTGTTTGGATGAGTTTGAGGTGGATGAAGAAGCCAAGGAGATGCCATGTAAACATAAATTTCATACAGGGTGTATTCTGCCATGGCTGGAGCTGCATAGTTCTTGCCCAGTTTGTAGGCATCAATTGCCTGGGGATGAATCCAAGCGTGATGCGGATGGTGGGTCTACTAGGTTCATGGGTGACCTTAATAATGCTAATGGTAGTGGCAGCGGGGAGATTATTGATGGGAGAAATGCATCTGGGACTGGGAGAAGGTTTTCGTTTCCATGGCCTTTCAATGGCTTGTTTTCTGCGCAAGGAAACTCCTCGGGTGGAAGTGCAAGTGATTCTCAAAGGGATCACGCTTCCATTTGAATATATGCTTCTGCTCTGCTTGCTTGCCTATTGCATGTATGTGTATGTATATGTGTTTTACTTATATTATAACTATACAGATCTTTTGCCTCCTGCCCTTAGAACAATCTGAATCTCTCTTCTTACCATTTTACCAACATTATCGTATACTATATGCCTTTTCACTCTCA 1759 44.8 MDELIATRYWCHMCSQMVNPIVDVEIKCPFCRSGFVEEIGNGISNDNNDNNSNNNELESDFGSERALSLWAPILLGMMGNPRGRRRFRHLEFDEDDDDNEHEDGEGNRVSSEPTDLDSVIRRRRSSATILQLLQGIRAGMATAESENSYEGERSRERERVILINPFNQTIVVQGGENQNQNPIGSLGDYFVGPGLDLLLQHLAENDPNRYGTPPAQKEAVDALPTVRVEPVDSCLQCAVCLDEFEVDEEAKEMPCKHKFHTGCILPWLELHSSCPVCRHQLPGDESKRDADGGSTRFMGDLNNANGSGSGEIIDGRNASGTGRRFSFPWPFNGLFSAQGNSSGGSASDSQRDHASI 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11003784 11005645 - XM_039045834.1 Bhi10g00490 46831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g00490 356 MobiDBLite consensus disorder prediction 298 312 - -
Bhi10g00490 356 SUPERFAMILY RING/U-box 231 282 - -
Bhi10g00490 356 MobiDBLite consensus disorder prediction 281 312 - -
Bhi10g00490 356 MobiDBLite consensus disorder prediction 95 118 - -
Bhi10g00490 356 Pfam Ring finger domain 236 278 IPR001841 -
Bhi10g00490 356 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 332 - -
Bhi10g00490 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 284 IPR013083 -
Bhi10g00490 356 CDD RING-H2_RNF181 236 281 - -
Bhi10g00490 356 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 3 332 - -
Bhi10g00490 356 Pfam zinc-ribbon 7 39 IPR039525 GO:0061630
Bhi10g00490 356 ProSiteProfiles Zinc finger RING-type profile. 237 278 IPR001841 -
Bhi10g00490 356 SMART ring_2 237 277 IPR001841 -
Bhi10g00490 356 MobiDBLite consensus disorder prediction 103 118 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g00490 K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] - csv:101216515 573.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g00490 Bhi-Chr10:11003784 Bhi12g01179 Bhi-Chr12:34977010 4.11E-45 dispersed
Bhi10g00489 Bhi-Chr10:11003784 Bhi10g00490 Bhi-Chr10:11003784 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g12 . . . . Bpe01g00362 . . . . . . . . . . Cpe05g00568 . . . . . . . . Cla02g02368 Cam02g2519 Cec02g2566 Cco02g2595 Clacu02g2493 Cmu02g2424 Cre02g2742 . . . . . . Chy05g00006 Cme05g00008 Blo08g00158 Blo14g00331 . . . . Bma07g00317 Bma11g00345 . Cmo02g01194 Cmo20g00005 Cma02g01160 Cma20g00005 Car02g00960 Car20g00003 Cpe16g00943 . Bhi10g00490 Tan07g0562 . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006217 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 0 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi10g00490 Bhi_Chr10 FPKM 77.010384 77.560478 99.00705 97.964111 67.997772 65.48156 77.361862 84.886543 82.477417 97.195572