Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g00540 CCCTCTTCATCCCGCGATACGATACGAATCCAATCCAACCAAAAAATTAAACATAAAAAAGCTCCTCTCTTTCTTTCCCCTTTCCTTGTTTTCTCGTTTTCCTTTGTCCATTTTCAGATTGTTTGTTTGGTTGTTTTGTTTGCTTCCTTCCTTGGCTTCAACCAACACCCCTCGCCATTTGGGATCTAAACACATTACCCCCATTCTCCTTTTTGCCCCCTTTCCCCCCTTTCTCTTGAATGCTTCAGAAGAACAACAAGCTGGGAAGGATTTGCTCTTTTCACTCCGACTCAGATTGCCTCACTTGGAAGTTTTCTTTCAAATTTCATTTTCTGGCTTCTCTTTTGACTTTCAATTCAGTTGCTTTCTTCTTTTCAATCAAGGAAGCTGTATTATTGGTTACGAACAAAAACTGGGTTCAGAGGGTTTACATTTGGGGGAAAACGCAGTCATTCGAATGAAAGAAGCAGAGAAAAATTTAGATCCTCAACTATGGCATGCCTGTGCCGGAGGTATGGTCCAGATGCCGGCGATTAACTCCAAGGTTTTCTACTTCCCTCAGGGTCACGCCGAGCATGCTCAGGCCACCGTCGATTTCACCTCTTCACTCAGAATCCCGCCTCTTATTCCTTGTCGAGTGCTCGCCGTTAAGTTCTTGGCTGACCATGAAACGGATGAGGTTTTTGCGAATATAAGAATGGTTCCCCTGCCGAACAACGACATCAATTTCGAAGACGAGGGTGGGTTTGGGAGTAATGGGTCTGAGAATAATATGGAGAAACCGGCTTCCTTTGCCAAGACGTTGACTCAATCTGATGCCAATAACGGCGGTGGGTTTTCCGTTCCGAGGTACTGTGCGGAGACTATTTTTCCGCGGCTGGATTACACGGCGGATCCGCCGGTTCAGACGGTAATTGCCAAGGATGTTCACGGCGAGGTTTGGAAGTTCCGCCATATTTACAGAGGGACGCCTCGCCGGCATTTGTTGACTACTGGGTGGAGTACTTTTGTGAATCAGAAGAAGCTCGTCGCTGGCGATTCGATTGTTTTTCTAAGATCCAAAAATGGCGACCTTTGTGTTGGAATCCGGCGAGCCAAACGGGCAATTGGGTGTGCCGCCGATCACCCGTACGGATGGAATCCCGGCGGTGGAAATTGCATCCCACCTTACGGTGGATTGACGATGTTTTTGAGAGATGATGACAATAAGTTGAGTAGAAAAGGGTCTTTGAGTTCCAGTGGTGGTGGTGGGAATTTGAGGGGAAAAGGTAAAGTGAGGCCGGAATCAGTGATGGAAGCGGCGGCGCTTGCGGCGAGCGGGCAGCCGTTTGAGGTGGTTTATTACCCACGTGCCAGCACGCCGGAGTTCTGTGTTAAGGCCTCATCGGTGCGAGCCGCCATGAGGATCCAATGGTGTTCTGGTATGAGGTTCAAGATGCCATTTGAGACAGAGGATTCTTCTCGGATTAGTTGGTTTATGGGCACCATTTCTTCTGTTCAAGTTGCTGATCCTATCCGTTGGCCTAATTCTCCATGGCGGCTTCTTCAGGTGACATGGGATGAACCAGATTTGCTACAGAATGTGAAGCGTGTTAGCCCATGGTTAGTTGAACTGGTATCAAACATGCCCGTCATTCAACTATCACCATTTTCTCCACCGAGAAAGAAATTTCGACTACCACAACACCCAGACTTTCCCCTCGACGGCCAATTCCCACTGTCTTCGTTTTCGAGCAATACCCTTAGGCCAAGCAGTCCCATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCAATTTGGAATATCTTTATCAGATTTCCATCTCAACAACAAACTGCAATTAGGGCTGGTTCCATCCAGTTTTCAGCAGCTTGATTTTCACTCTAGGATTTCCAATAGATCAGTAACAGACCACAGAGATAGCAGCAGTCAGAACTCATCAGCGTTGCTAAACGGGGAAAAGACTGGTCCAAAGTTGGAAAGATCCGATTCGGTGAAGAAGCATCAGTTTTTACTCTTTGGTCAACCTATACTCACTGAACAGCAAATCACTTGCAGCTCTTCCGGCGACATTCGTTCACCTCGGACAGAGAAAAGCTCCTTGGATATGAATTTGGAGAGAGTGAAGTTTCTTTCTAATAACTCAGGATCCACTACCAAGCAGCAAATTTCTCCAAACAAGTCATCAGGAGTAGGATTTCCATGGTACCAGGGTTATCAAGCCACTGAACTCGGCCTAGACACCGGTCACTGCAAGGTATTTATGGAGTCAGAAGATGTGGGCCGGACACTCAACCTTTCAGTCATTGGCTCATATGAAGAACTATACAGGAGGCTTGCGAATATGTTCGGTATGGAAAAACCAGACATTCTAATTAGCCATGTACTGTACCAAGATGCAACAGGTGCTGTGAAACAAGCTGGTGATAAACCATTCAGTGATTTCATCAAAACAGCTAGAAGACTGACGATACTAACGGACTCGGGTTCTGACAAGCTGGGAAGGACATTGATGGATGGAATGAGAAGTGGTGAAAATGGATTGGATGCTTCAAACAGGACTGGCCCTTTGAGCATATTTGCCTAGCGCCTACCTTTCCTGATTATAGGGGGAATGAATCCAACAAATGTATCTGCTCCAGAATTCTGCTTGTTTACTGGGAAAATAGACTCTTGAGATCTTCAATCATTTTATTAATCATGTTTTTGTCTTACTATGCATCATCATCAAATGCAACTGTCTATAATATATCTAACTGGATCTTGTTTGATGCCTAATGTTATTCATATTTTCCTTTTTA 2822 45.54 MKEAEKNLDPQLWHACAGGMVQMPAINSKVFYFPQGHAEHAQATVDFTSSLRIPPLIPCRVLAVKFLADHETDEVFANIRMVPLPNNDINFEDEGGFGSNGSENNMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRSKNGDLCVGIRRAKRAIGCAADHPYGWNPGGGNCIPPYGGLTMFLRDDDNKLSRKGSLSSSGGGGNLRGKGKVRPESVMEAAALAASGQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSPPRKKFRLPQHPDFPLDGQFPLSSFSSNTLRPSSPMCCLSDNTSVGIQGARHTQFGISLSDFHLNNKLQLGLVPSSFQQLDFHSRISNRSVTDHRDSSSQNSSALLNGEKTGPKLERSDSVKKHQFLLFGQPILTEQQITCSSSGDIRSPRTEKSSLDMNLERVKFLSNNSGSTTKQQISPNKSSGVGFPWYQGYQATELGLDTGHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILISHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDSGSDKLGRTLMDGMRSGENGLDASNRTGPLSIFA 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11941997 11945833 + XM_039046265.1 Bhi10g00540 46881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g00540 716 MobiDBLite consensus disorder prediction 252 272 - -
Bhi10g00540 716 MobiDBLite consensus disorder prediction 492 507 - -
Bhi10g00540 716 SMART B3_2 112 214 IPR003340 GO:0003677
Bhi10g00540 716 MobiDBLite consensus disorder prediction 487 516 - -
Bhi10g00540 716 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 693 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bhi10g00540 716 SUPERFAMILY DNA-binding pseudobarrel domain 107 216 IPR015300 -
Bhi10g00540 716 CDD B3_DNA 111 212 IPR003340 GO:0003677
Bhi10g00540 716 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bhi10g00540 716 Gene3D - 110 214 IPR015300 -
Bhi10g00540 716 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Bhi10g00540 716 ProSiteProfiles PB1 domain profile. 603 684 IPR000270 GO:0005515
Bhi10g00540 716 PANTHER AUXIN RESPONSE FACTOR 2 693 - -
Bhi10g00540 716 Gene3D - 602 689 - -
Bhi10g00540 716 Gene3D - 319 392 - -
Bhi10g00540 716 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g00538 Bhi-Chr10:11941991 Bhi10g00540 Bhi-Chr10:11941997 0 dispersed
Bhi10g00540 Bhi-Chr10:11941997 Bhi02g00618 Bhi-Chr2:12034365 4.66E-74 dispersed
Bhi10g00539 Bhi-Chr10:11941992 Bhi10g00540 Bhi-Chr10:11941997 0 tandem
Bhi10g00540 Bhi-Chr10:11941997 Bhi10g00541 Bhi-Chr10:11942210 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2111 PF02362 B3 1.40E-21 CL0405 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g00540 - - bhj:120088819 1422.91