Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g00666 AGATTATTTTATTAAACATAGTTTCCACTCTCAAGCACTGCACTTTTCCCAATTACCCTATCAGTCCTTCCCTCATAAAACCCATCATTTTCGTCGAAATTCGTCGCCGGAGCAGCCTCGCCGGAACTCCACTATTTCGCAACCTAGTTATCAACAGACGTGAAATGGTGGGCTCGAAGAAATTTGGGTAATAGTTCGTTTAACAAGGAACCTCCGTCTTTGGAAAAGTTTCTATGAAGATTCATGCTTCTCCGCGTGGTACATGCTGTGTTCAGTGAATGAGACAATACTACTTCGGATTAGAAGAAGAATCAGAATGAATAAAGGTTTGTGGATGACAAAGGGTCCTGGGCATGAAAATGATGCAAATTCAACTTTTGACAGCCCATCATTATTAGACACAAAGCGAGCACATCACTGGTTTATAGATGGTTGTGAGGCACAGGTTTTCCCCAACAAGAAGCAAGCCATTCAAGCTCCAAGTAGTAAAATGACTGGAGCACTGTCTAATATGAACGTTTTTCCGTGGGAGCATCATACTGCTAATTATCAGTCTGTTTCACATCAACTTATTGGTCGCTTATTTGGGCCTGAATCATTAAGGTCTGCTGACTTTGATCTAACTAAAGCATCTTCTGTAATTTCGGATAATTTGGACCTCAGGAGAAAAGGTATTGAAGTTGAAGACCATTATGGAGAGGATGCATCTGTTGGGTTGTCTATTTCTAATGGTATGGAGGACCCTGAAACCTCTCCTAGATATGGAGGAATTAGAAAAGCGAAAGTCAATCAGGTTGAAGATAATATACATGATCTACAACCTTGTCTAAGAAGTAATTCTAATAGGGAAGATGGTGGTCAACTCACCATAGAAAGTTATTATAAGGAAATTGAAACAGGTCTTGTATCTGTGGGATCAGCCTATATTAAGGAGGATGACAGTTTCAGTTTGATGAACCAAACCTCTAATGATGGGGATCACCATATTAGGTTTTTAGGTCATAGTGGGAAGGTAGATGATAATGTTGTCTCCATTGGTGATGATTATGGTAAGAGAGATGCAAATATAATCTCATTTGATGGATTTCCTGATGAGCAAGATATTATATCCTTAGGCAGGTCTCTTGGTAACCATGACTCAACATTCTACGAACCTTCATTCCAAGCATCTGAAGCTGATGGTGTCACAGAGTTGGAATCATCAAGTTTAGATGTACCTGTAAGCAGTTCTCAGATAGCTAAGCAAAAGCTTGATATGACGCTGAAGAGTAGACCAGAATACAAAACGAGGAAAGAAGCTCCAAACAGCTTTCCTTCAAATGTTAGAAGTTTAATATCGACCGGTATGCTCGATGGTGTTCCTGTTAAGTATGTTTCTGTAACCAGAGAGGAGCTTCGTGGAATAATTAGGGGATCTGGCTATCTTTGTGGATGCCAATCTTGCAACTTTTCCAAAATGCTTAATGCGTATGAGTTCGAGCGGCATGCTGGCTGCAAAACAAAACACCCAAATAATCATATATACTTTGAGAATGGGAAGACTATTTACCAGATTGTACAAGAGTTAAGAAGCACTCCGGAGAGCTTGTTGTTTGATACAATTCAAACTATATTTGGTGCACCTATCAATCAGAAATCTTTTCGGATTTGGAAAGAATCATTTCAAGCAGCTACCCGCGAGCTTCAGCGCATATATGGCAAGGATGAACTTAACCTTTAGTAGACTAGAATTCATTGCGAGTTCTATAAATGCAAGACAAGCTTAGGTGGATAGTGTTCAAGAGAATAAAAAATTTTCATGCTAACTGATTCATGGTCTGTACGATTTCGAAGTTGAAAATAAGTATTTCTGTCCTACTCGCCTAGATGCATCAGGATGGTGGTTAGAATTCAGTTCCGTATTAGAAAAGGAAACCATGTATCAAGTACCTTGAACAATGGGGGGTTAGGATTTGGATTTTGCACCTTGTTTGGAGCGTTCGTCACCATTTTGTGTTGGAAACAACACCCACATTGTAAATCTCTTATTACATGAAAGCCTGACTCAACTTTCCGTCAACTGTTAAATTGTGTAGCTGTAGAGTGTATGTATTATTGGGGGTTGATATTTGAACACATGGAAATTTTAACCTTTTTGTTGAAGTTGCTTCTATTTTTTTGCA 2162 39.18 MLCSVNETILLRIRRRIRMNKGLWMTKGPGHENDANSTFDSPSLLDTKRAHHWFIDGCEAQVFPNKKQAIQAPSSKMTGALSNMNVFPWEHHTANYQSVSHQLIGRLFGPESLRSADFDLTKASSVISDNLDLRRKGIEVEDHYGEDASVGLSISNGMEDPETSPRYGGIRKAKVNQVEDNIHDLQPCLRSNSNREDGGQLTIESYYKEIETGLVSVGSAYIKEDDSFSLMNQTSNDGDHHIRFLGHSGKVDDNVVSIGDDYGKRDANIISFDGFPDEQDIISLGRSLGNHDSTFYEPSFQASEADGVTELESSSLDVPVSSSQIAKQKLDMTLKSRPEYKTRKEAPNSFPSNVRSLISTGMLDGVPVKYVSVTREELRGIIRGSGYLCGCQSCNFSKMLNAYEFERHAGCKTKHPNNHIYFENGKTIYQIVQELRSTPESLLFDTIQTIFGAPINQKSFRIWKESFQAATRELQRIYGKDELNL 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14678227 14681620 + XM_039046924.1 Bhi10g00666 47007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g00666 485 PANTHER AUTOIMMUNE REGULATOR 19 485 - -
Bhi10g00666 485 PANTHER DNA-BINDING PROTEIN 19 485 - -
Bhi10g00666 485 Pfam Tify domain binding domain 380 435 IPR032308 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g00666 - - - bhj:120089449 969.533
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi07g00927 Bhi-Chr7:31089681 Bhi10g00666 Bhi-Chr10:14678227 2.47E-43 dispersed
Bhi10g00666 Bhi-Chr10:14678227 Bhi11g02231 Bhi-Chr11:61072424 1.88E-44 dispersed
Bhi10g00666 Bhi-Chr10:14678227 Bhi11g02030 Bhi-Chr11:57655962 2.64E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g395 . . . . . . Bma14g00490 . . . . . . . . Cpe05g00901 . . . . . . . . Cla02g01990 Cam02g2110 Cec02g2150 Cco02g2180 Clacu02g2097 . . . . . . . Csa06g01725 . Cme11g01269 . . . . . Bpe11g00777 . . Sed05g2941 Cmo02g00831 Cmo20g00463 . Cma20g00425 Car02g00597 Car20g00370 . . Bhi10g00666 Tan05g0358 Cmetu11g0841 . Hepe08g0810 . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g02231 . 18 836 PHD Transcription Factor Family AT3G53680 53.9 8.4e-253 870.9
Bhi11g02230 . 18 813 PHD Transcription Factor Family AT3G53680 52.6 8.1e-240 827.8
Bhi07g00927 . 436 565 PHD Transcription Factor Family AT3G53680 54.6 1.8e-37 155.6
Bhi10g00666 . 343 468 PHD Transcription Factor Family AT3G53680 53.5 4.4e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004604 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 4 3 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi10g00666 Bhi_Chr10 FPKM 11.319117 11.731359 14.361372 14.566565 8.549342 9.902282 8.953125 2.607977 2.385437 1.954823