Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g00696 TTAAAATCCGAATTTCCATTTTGCATCGCTCCATATTTCTTCATTTACATTAATATTTTTTGAACGCAAAGGCGGGCAGCTGAGATCGCAGCCACTTTCTTCCTCACCTTAGCGCGCTTTCGTTCTTCTCAGTGATCGAAGATGGCAGAAGGGGAGGATATTCAGCCACTTGTCTGCGACAATGGAACAGGAATGGTCAAGGCTGGCTTTGCTGGAGATGATGCTCCAAGGGCCGTGTTTCCTAGTATAGTGGGTCGACCAAGGCATACCGGTGTGATGGTTGGAATGGGGCAAAAAGATGCGTACGTTGGGGATGAAGCTCAGTCGAAACGTGGTATATTAACTTTGAAATATCCCATTGAGCATGGTATAGTGAGCAATTGGGATGATATGGAGAAAATTTGGCATCATACCTTTTACAATGAACTTCGAGTGGCTCCTGAAGAGCACCCTGTCCTACTCACTGAAGCACCTCTGAACCCAAAGGCAAACCGTGAAAAAATGACCCAAATCATGTTCGAAACCTTCAACACTCCTGCCATGTATGTTGCCATTCAGGCTGTTCTTTCCCTCTATGCTAGCGGACGCACAACTGGTATTGTTCTGGATTCTGGAGACGGTGTCAGTCACACTGTCCCCATTTATGAGGGGTATGCTCTCCCCCATGCTATACTCCGTCTTGACCTTGCTGGCCGTGACCTCACTGATGCCCTTATGAAAATCTTGACTGAACGTGGGTATTCCTTCACCACCACAGCCGAGCGTGAAATTGTGAGGGATATGAAGGAAAAACTAGCATATATTGCCCTTGATTTTGAGCAAGAACTTGAAACTTCCAAGACTGGTTCGTCTGTTGAGAAGAGTTATGAACTGCCTGATGGGCAGGTAATCACAATTGGTGCAGAACGTTTTCGATGTCCTGAAGTTCTTTTCCAGCCTTCAATGATCGGAATGGAAGCTGCAGGCATCCACGAAACAACATATAACTCCATCATGAAATGTGATGTTGATATCAGGAAGGATCTGTATGGAAATATTGTTCTTAGTGGTGGATCAACCATGTTCCCTGGTATTGCTGACAGAATGAGCAAAGAAATAACTGCATTAGCCCCTAGCAGCATGAAAATAAAGGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATCGGTGGCTCCATTTTGGCCTCCCTCAGCACGTTTCAGCAGATGTGGATCGCAAAGGCAGAGTATGATGAGTCTGGTCCATCAATTGTGCACAGGAAATGCTTCTGATTTTGCCAGCCAACCTGCAACCAACCAATTTTTTGGGCAGTACAATTGCACTTTGTTTCTATTCCTCGCGTTTCTCTAAATTTTGTCTCTGTTTTTTTTTTTCATACTGCAATTATTAATTTAATAGTGGAAATTGTGTTTAGTTATCGTTTTTTTTAATATTATGTTGTATTGGCAGTTGTTGAGAAATTAAATTCAATCACGTCATTTGATGTTGCTTATCAATGTAGGACCTTTCGACCACTCTACTGTCTTGCAAAAA 1537 43.4 MAEGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDFEQELETSKTGSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15156043 15159153 + XM_039044600.1 Bhi10g00696 47037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g00696 377 Gene3D - 10 371 - -
Bhi10g00696 377 SMART actin_3 7 377 IPR004000 -
Bhi10g00696 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Bhi10g00696 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Bhi10g00696 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Bhi10g00696 377 Pfam Actin 5 377 IPR004000 -
Bhi10g00696 377 Gene3D - 140 340 - -
Bhi10g00696 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Bhi10g00696 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Bhi10g00696 377 PANTHER ACTIN 3 1 376 - -
Bhi10g00696 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Bhi10g00696 377 PANTHER ACTIN 1 376 IPR004000 -
Bhi10g00696 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Bhi10g00696 377 PRINTS Actin signature 28 37 IPR004000 -
Bhi10g00696 377 PRINTS Actin signature 51 62 IPR004000 -
Bhi10g00696 377 PRINTS Actin signature 63 85 IPR004000 -
Bhi10g00696 377 PRINTS Actin signature 117 130 IPR004000 -
Bhi10g00696 377 PRINTS Actin signature 142 161 IPR004000 -
Bhi10g00696 377 PRINTS Actin signature 238 254 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g00696 K10355 ACTF; actin, other eukaryote - csin:114318813 753.436
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g00651 Bhi-Chr9:14022406 Bhi10g00696 Bhi-Chr10:15156043 2.69E-67 dispersed
Bhi10g00696 Bhi-Chr10:15156043 Bhi11g02537 Bhi-Chr11:68544047 0 dispersed
Bhi10g00696 Bhi-Chr10:15156043 Bhi10g00697 Bhi-Chr10:15156051 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g432 . . . Bda09g01504 Bpe01g00134 . . . . . . . . . . Cpe05g00918 . . . . . . . . Cla02g01971 Cam02g2090 Cec02g2127 Cco02g2157 Clacu02g2076 Cmu02g2013 Cre02g2324 Cone1ag0645 . . . . . . . Blo13g01078 Blo14g00119 . . Bpe08g00106 . . Bma11g00120 Sed08g0343 Cmo02g00807 Cmo20g00447 Cma02g00806 Cma20g00406 Car02g00582 Car20g00354 . . Bhi10g00696 Tan05g0383 Cmetu02g1792 . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT2G37620 96.6 3.4e-214 741.5
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 5.9e-214 740.7
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 5.9e-214 740.7
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.8e-213 738.0
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.8e-213 738.0
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-212 735.7
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 1.9e-212 735.7
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 9.4e-212 733.4
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 3.4e-214 741.5
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT5G59370 97.3 4.5e-214 741.1
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 7.7e-214 740.3
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 7.7e-214 740.3
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT5G59370 96.0 1.4e-212 736.1
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT5G59370 93.6 3.9e-210 728.0
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 5.1e-210 727.6
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 5.1e-210 727.6
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 1.5e-214 742.7
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 1.3e-213 739.6
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 2.2e-213 738.8
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 2.2e-213 738.8
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT3G46520 96.3 6.5e-213 737.3
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT3G46520 93.9 1.8e-210 729.2
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.3e-210 728.8
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.3e-210 728.8
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.5e-214 742.7
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 2.6e-214 741.9
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 2.6e-214 741.9
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 4.5e-214 741.1
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 2.9e-213 738.4
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.4e-212 736.1
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.4e-212 736.1
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT3G12110 94.7 1.2e-211 733.0
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 4.3e-209 724.5
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 7.4e-209 723.8
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 7.4e-209 723.8
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 8.2e-208 720.3
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.4e-207 719.5
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.4e-207 719.5
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 2.4e-207 718.8
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 5.3e-207 717.6
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 1.5e-209 726.1
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.6e-209 725.3
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.6e-209 725.3
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 2.8e-208 721.8
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 8.2e-208 720.3
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 1.8e-207 719.2
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 3.1e-207 718.4
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 3.1e-207 718.4
Bhi03g01386 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.3e-216 749.6
Bhi10g02339 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.3e-216 749.6
Bhi05g00802 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 4.5e-214 741.1
Bhi11g02537 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 2.9e-213 738.4
Bhi07g00912 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 5.0e-213 737.6
Bhi10g00696 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 5.0e-213 737.6
Bhi10g00697 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 5.0e-213 737.6
Bhi06g00625 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 5.5e-212 734.2
Bhi06g01687 . 1 131 Cytoskeleton Gene Families AT2G19760 77.9 1.2e-57 219.9
Bhi06g01686 . 1 133 Cytoskeleton Gene Families AT2G19760 75.9 8.7e-56 213.8
Bhi09g00471 CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 74.0 2.5e-55 212.2
Bhi01g03373 CCT,ECH 1 129 Cytoskeleton Gene Families AT2G19760 74.4 2.8e-54 208.8
Bhi09g02559 . 1 132 Cytoskeleton Gene Families AT2G19760 73.5 2.4e-53 205.7
Bhi06g01687 . 1 131 Cytoskeleton Gene Families AT4G29350 78.6 3.5e-57 218.4
Bhi06g01686 . 1 133 Cytoskeleton Gene Families AT4G29350 74.4 7.4e-55 210.7
Bhi09g00471 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 74.0 7.4e-55 210.7
Bhi01g03373 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 72.5 1.8e-53 206.1
Bhi09g02559 . 1 132 Cytoskeleton Gene Families AT4G29350 72.0 2.2e-51 199.1
Bhi06g01687 . 1 87 Cytoskeleton Gene Families AT5G56600 77.0 3.4e-37 151.8
Bhi06g01686 . 1 133 Cytoskeleton Gene Families AT4G29340 85.1 6.2e-65 244.2
Bhi09g00471 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 76.9 1.1e-58 223.4
Bhi06g01687 . 1 131 Cytoskeleton Gene Families AT4G29340 69.4 1.1e-53 206.8
Bhi09g02559 . 1 132 Cytoskeleton Gene Families AT4G29340 72.4 9.2e-53 203.8
Bhi01g03373 CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 69.4 2.7e-52 202.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi10g00696 Bhi_Chr10 FPKM 1.997612 1.689387 4.246881 3.415723 2.420933 2.460643 2.284315 8.246496 8.038163 7.601462