Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g00804 CAAAGCCGTTTAAAACTCTTCACCAGCGGGAAAATCACTGCACATCTCTCAGTTTCCCGCTAAAAACACAACTACTTTCTTCTCTCAAAGAATCTTCCCAATTCTACAATATACAAACCCTAGATCGATCTGCATACCGATCCATAACCGTGGAAGATCAAAACAATGCCAGCCATCACTCGAGCAAATCACTGTAAGATCGAGAGTGGAACGACTTTGAACGATGTTATGGTTGCGAGAGTGACCGATGGAGGTGCTGTAATGGAAACTACTCCGAAGCGAAAACTGAGATCCAGTGATGCGCACAGGCAACAAAGCCCTGTCTCTGCGCCGGTGAATTGGAAATCGCCTCGCTGGCGCCTTAATTCGAGTCCTAAAAGCCCTCCACAGAGCGATGGGAAAACGTTTAATGATGGCTTTTCTAATTTACATAGTTCACCGATAAGATGCTTGTTAAAGGACCTTATTGTCAAACCAGATTGGAATCCTAAAGACACTGAACATATAAAAACAGCAAAGGAAGCATTGCACGTATCGACAGCTCCAACTACAATCATGTGCCGTGAAGATGAACAAAGTAAAATCTTAAATTTCTGCAAGGCGTGTGTGGAGCAAGAAAAAGCTGGTAGTTTGTATGTTTGCGGGTGTCCAGGAACTGGCAAATCTTTGTCCATGGAAAAAGTCAAAGAGCGTTTGGCTGCTTGGGTGAAAGAGTCAGGTCTTCAGCTGCCAGACATTTTGTCCATAAACTGCACTTCGTTAGCCAATACATCCGATATTTTCATTAAGATGATGGGTGAAGCCCAACCACAAAAGAAAAGGAATGGCTCTTTAACACCCTTGCAACATCTTCAACGCCTGTACTCCCAGAAGGCAGAGTCATCTTGCATGAAGATGATGTTGATAATAGCTGATGAATTGGATTATTTAATTACAAAAGATAAAGCAGTGCTACATGATCTGTTCATGCTCACAACTTTCCCATTTTCAAGATGTATTTTGATAGGAATTGCAAATGCTATTGACTTAGCAGATCGCTTTCTTCCGAGACTTCAGGCGTTGAATTGCAAACCTCAGCTTGTAACTTATAGGGCATATTCCAAGGAACAGATCCTCAAGATTCTTCAACAAAGGTTTATTGGGCTACCTTTCGTTGTCTTTCAGTCGCAAGCACTGGAGCTTTGTGCTAGAAAAGTTGCAGCCGTGTCTGGAGATATGAGAAAAGCTCTTTGTGTTTGCAGGAATGCCATCGAATTGTTAGAGGGGGAACTCAAAGCATCCCCTAAGGAGCTGAACCATGATGATGCAAGTGATGCTTCAGCACCACCTGAGCTTGTCAAGATACAAGAGTCTCAGATTGTGAGGTTGGACCATATGGCTGTTGCCTTATCCAAGACTTTTAAATCACTAGCAGTGGAAACCATAAAATCTCTTCCTCAGCATCAACAGATCATCTTATGCTCTGTTGTGAAACTTGTTCGTGGAGGAAAGAAGGATACAACTATAGGAGAGCTAAACAAATCATACATAGACATATGTAAATCAACTCTAATCCCACCGGTGGGGAGTTTGGAACTTTCAAATATGTGCACAGTGCTAAACGACCAGGGGCTTCTCAAACTTGGGCAGTCTCGAGATGATAAAATGAGAAGAGTGTTGTTGAAAGTTGACGAAGCCGACGTCATGTTTGCATTACAGGGAATACGCTTCTTTCGAAATTGCCTACAGTAAATTAGCCGTTCTCCATATTACCGAGTATAGATTGGTGGAGTAAACAGTACACACTACCTTCTTGCTTTTGTCCCACCACTCAAGGAAAAAAAAGAGATACATTCCAACAGAACAATCTATTACTTTTCCAGCCGGCACAAGAAGTTCCTCACCGGAACTCATACAAAGCACTCAATTATAGCAAATGTTGTATGGTAAAGAATGAGGAAGTTTTCATTGTATTTTTCTTTTTTCATG 1968 41.92 MPAITRANHCKIESGTTLNDVMVARVTDGGAVMETTPKRKLRSSDAHRQQSPVSAPVNWKSPRWRLNSSPKSPPQSDGKTFNDGFSNLHSSPIRCLLKDLIVKPDWNPKDTEHIKTAKEALHVSTAPTTIMCREDEQSKILNFCKACVEQEKAGSLYVCGCPGTGKSLSMEKVKERLAAWVKESGLQLPDILSINCTSLANTSDIFIKMMGEAQPQKKRNGSLTPLQHLQRLYSQKAESSCMKMMLIIADELDYLITKDKAVLHDLFMLTTFPFSRCILIGIANAIDLADRFLPRLQALNCKPQLVTYRAYSKEQILKILQQRFIGLPFVVFQSQALELCARKVAAVSGDMRKALCVCRNAIELLEGELKASPKELNHDDASDASAPPELVKIQESQIVRLDHMAVALSKTFKSLAVETIKSLPQHQQIILCSVVKLVRGGKKDTTIGELNKSYIDICKSTLIPPVGSLELSNMCTVLNDQGLLKLGQSRDDKMRRVLLKVDEADVMFALQGIRFFRNCLQ 521
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 16284184 16290228 + XM_039046105.1 Bhi10g00804 47145

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g00804 521 CDD Cdc6_C 424 506 IPR015163 -
Bhi10g00804 521 Pfam CDC6, C terminal winged helix domain 431 509 IPR015163 -
Bhi10g00804 521 Gene3D - 301 419 - -
Bhi10g00804 521 Gene3D - 420 510 IPR036388 -
Bhi10g00804 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 366 IPR027417 -
Bhi10g00804 521 MobiDBLite consensus disorder prediction 29 83 - -
Bhi10g00804 521 CDD AAA 136 296 - -
Bhi10g00804 521 PANTHER CELL DIVISION CONTROL PROTEIN 6 HOMOLOG 36 520 - -
Bhi10g00804 521 PIRSF Cdc6 20 521 IPR016314 GO:0006270|GO:0051301
Bhi10g00804 521 SMART Cdc6_C_2 431 510 IPR015163 -
Bhi10g00804 521 Gene3D - 110 300 IPR027417 -
Bhi10g00804 521 MobiDBLite consensus disorder prediction 47 83 - -
Bhi10g00804 521 Pfam AAA lid domain 333 366 IPR041083 -
Bhi10g00804 521 Pfam AAA domain 151 271 IPR003593 -
Bhi10g00804 521 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 36 520 - -
Bhi10g00804 521 SMART AAA_5 152 302 IPR003593 -
Bhi10g00804 521 SUPERFAMILY Winged helix DNA-binding domain 417 519 IPR036390 -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g00804 K02213 CDC6; cell division control protein 6 - csv:101205741 850.506
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g00804 Bhi-Chr10:16284184 Bhi06g00267 Bhi-Chr6:6250002 1.59E-27 dispersed
       

Deco-Alignment


Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g599 . . Bda02g00849 . Bpe01g00096 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag0580 Cone5ag1091 . . . Csa06g01433 . Cme11g01369 Blo13g01051 Blo14g00089 . . . . . Bma11g00084 Sed05g3754 . . . . . . . . Bhi10g00804 Tan05g0460 Cmetu11g1143 . . . . . . . . . . . . . . .
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi06g00279 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00277 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00275 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00278 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00274 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00276 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00271 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00282 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00270 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00280 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00273 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00272 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00269 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00283 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00281 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00284 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00267 . 105 801 Core DNA Replication Machinery Family AT4G14700 66.4 4.3e-270 928.3
Bhi06g00268 . 105 768 Core DNA Replication Machinery Family AT4G14700 64.3 6.8e-244 841.3
Bhi06g00279 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00277 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00275 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00278 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00274 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00276 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00271 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00282 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00270 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00280 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00273 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00272 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00269 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00283 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00281 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00284 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00267 . 105 801 Core DNA Replication Machinery Family AT4G12620 68.1 3.9e-279 958.4
Bhi06g00268 . 105 768 Core DNA Replication Machinery Family AT4G12620 65.9 6.2e-253 871.3
Bhi04g00329 . 2 362 Core DNA Replication Machinery Family AT2G37560 65.1 2.3e-140 496.1
Bhi07g00500 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.0 6.9e-155 544.7
Bhi07g00501 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.0 6.9e-155 544.7
Bhi07g00499 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.0 6.9e-155 544.7
Bhi07g00502 . 9 362 Core DNA Replication Machinery Family AT2G01120 67.0 1.6e-135 480.3
Bhi12g01864 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.2 2.6e-173 606.3
Bhi12g01863 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.2 2.6e-173 606.3
Bhi06g00870 . 1 283 Core DNA Replication Machinery Family AT1G26840 66.3 4.9e-96 348.6
Bhi05g02013 . 5 804 Core DNA Replication Machinery Family AT1G79150 59.2 1.8e-247 853.2
Bhi11g01474 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.2 0.0e+00 1351.7
Bhi03g00062 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.9 4.8e-268 921.0
Bhi05g01792 . 1 845 Core DNA Replication Machinery Family AT2G16440 76.2 0.0e+00 1151.7
Bhi05g01791 . 1 827 Core DNA Replication Machinery Family AT2G16440 75.1 0.0e+00 1125.2
Bhi06g01859 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1117.8
Bhi09g00842 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.4 0.0e+00 1221.1
Bhi10g00804 . 31 520 Core DNA Replication Machinery Family AT2G29680 59.2 2.7e-161 566.2
Bhi10g00804 . 31 481 Core DNA Replication Machinery Family AT1G07270 57.3 3.1e-140 496.1
Bhi09g01348 . 1 593 Core DNA Replication Machinery Family AT3G25100 75.7 8.8e-257 883.6
Bhi11g02141 . 12 792 Core DNA Replication Machinery Family AT3G09660 73.0 0.0e+00 1098.2
Bhi11g02143 . 4 691 Core DNA Replication Machinery Family AT3G09660 77.1 6.6e-300 1027.3
Bhi11g02142 . 12 760 Core DNA Replication Machinery Family AT3G09660 69.4 4.3e-299 1024.6
Bhi05g00892 . 16 639 Core DNA Replication Machinery Family AT2G14050 78.1 2.0e-286 982.2
Bhi05g00890 . 16 654 Core DNA Replication Machinery Family AT2G14050 76.3 2.1e-283 972.2
Bhi05g00891 . 16 640 Core DNA Replication Machinery Family AT2G14050 76.2 4.4e-278 954.5
Bhi10g01853 . 1 410 Core DNA Replication Machinery Family AT2G20980 55.2 1.0e-115 414.5
Bhi09g02713 . 7 969 Core DNA Replication Machinery Family AT1G77320 50.1 4.2e-259 892.1
Bhi09g00040 . 1 200 Core DNA Replication Machinery Family AT1G80190 66.3 9.8e-75 277.3
Bhi11g01039 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.8 1.2e-61 233.4
Bhi11g01040 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.8 1.2e-61 233.4
Bhi11g01038 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.8 1.2e-61 233.4
Bhi11g01041 . 10 113 Core DNA Replication Machinery Family AT3G12530 76.0 6.7e-44 174.5
Bhi04g02308 . 5 188 Core DNA Replication Machinery Family AT1G19080 67.9 6.7e-70 261.2
Bhi04g02307 . 5 188 Core DNA Replication Machinery Family AT1G19080 67.9 6.7e-70 261.2
Bhi04g02308 . 5 188 Core DNA Replication Machinery Family AT3G55490 67.9 6.7e-70 261.2
Bhi04g02307 . 5 188 Core DNA Replication Machinery Family AT3G55490 67.9 6.7e-70 261.2
Bhi10g02136 . 1 1552 Core DNA Replication Machinery Family AT5G67100 60.0 0.0e+00 1758.8
Bhi04g01666 . 2 623 Core DNA Replication Machinery Family AT1G67630 59.2 3.1e-204 709.1
Bhi12g02443 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.3 3.7e-184 642.1
Bhi06g00131 . 7 450 Core DNA Replication Machinery Family AT5G41880 65.0 4.9e-175 611.7
Bhi03g01767 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.6 0.0e+00 1793.9
Bhi11g02542 . 1 438 Core DNA Replication Machinery Family AT2G42120 75.1 1.1e-203 706.8
Bhi11g02541 . 1 458 Core DNA Replication Machinery Family AT2G42120 71.8 3.3e-200 695.3
Bhi11g02540 . 1 439 Core DNA Replication Machinery Family AT2G42120 72.0 1.3e-191 666.8
Bhi12g02443 . 1 447 Core DNA Replication Machinery Family AT1G67320 65.3 3.7e-184 642.1
Bhi12g00555 . 1 127 Core DNA Replication Machinery Family AT1G09815 61.5 6.6e-37 151.0
Bhi10g00062 . 1 2096 Core DNA Replication Machinery Family AT1G08260 71.1 0.0e+00 2967.6
Bhi10g00064 . 1 1984 Core DNA Replication Machinery Family AT1G08260 72.4 0.0e+00 2875.9
Bhi10g00063 . 1 1679 Core DNA Replication Machinery Family AT1G08260 69.1 0.0e+00 2278.8
Bhi10g00062 . 25 2203 Core DNA Replication Machinery Family AT2G27120 67.9 0.0e+00 2937.9
Bhi10g00064 . 25 1984 Core DNA Replication Machinery Family AT2G27120 69.3 0.0e+00 2710.3
Bhi10g00063 . 1 1786 Core DNA Replication Machinery Family AT2G27120 65.7 0.0e+00 2289.6
Bhi08g01976 . 7 487 Core DNA Replication Machinery Family AT5G22110 70.1 8.0e-195 677.6
Bhi10g00207 . 1 922 Core DNA Replication Machinery Family AT5G22010 63.5 2.1e-310 1062.4
Bhi10g00210 . 1 922 Core DNA Replication Machinery Family AT5G22010 63.5 2.1e-310 1062.4
Bhi10g00208 . 1 921 Core DNA Replication Machinery Family AT5G22010 63.4 1.1e-309 1060.1
Bhi10g00209 . 1 891 Core DNA Replication Machinery Family AT5G22010 61.0 2.6e-292 1002.3
Bhi11g00361 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.0 5.8e-173 604.4
Bhi03g02358 . 171 503 Core DNA Replication Machinery Family AT5G27740 82.3 6.0e-160 561.2
Bhi09g02708 . 1 334 Core DNA Replication Machinery Family AT1G21690 82.1 1.7e-153 539.7
Bhi04g01892 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.1 1.6e-155 546.6
Bhi06g01594 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.5 1.5e-251 866.3
Bhi06g01595 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.5 1.5e-251 866.3
Bhi06g01596 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.5 1.5e-251 866.3
Bhi11g00244 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.3 1.1e-193 674.1
Bhi11g00248 . 1 353 Core DNA Replication Machinery Family AT2G06510 60.0 1.1e-132 471.5
Bhi02g00093 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.3 1.9e-246 849.4
Bhi11g00244 . 10 812 Core DNA Replication Machinery Family AT5G45400 51.7 4.7e-227 785.4
Bhi11g00248 . 1 462 Core DNA Replication Machinery Family AT5G45400 61.4 2.4e-162 570.5
Bhi02g00093 . 10 618 Core DNA Replication Machinery Family AT5G61000 67.4 1.5e-243 839.7
Bhi11g00244 . 5 798 Core DNA Replication Machinery Family AT4G19130 54.8 8.7e-228 787.7
Bhi11g00248 . 1 448 Core DNA Replication Machinery Family AT4G19130 61.3 3.4e-155 546.6
Bhi02g00753 . 1 224 Core DNA Replication Machinery Family AT3G02920 51.3 4.7e-57 218.8
Bhi11g02323 . 1 106 Core DNA Replication Machinery Family AT4G18590 66.0 1.5e-37 152.9
Bhi02g02229 . 1 404 Core DNA Replication Machinery Family AT5G26680 83.0 4.2e-189 658.3
Bhi02g02228 . 1 376 Core DNA Replication Machinery Family AT5G26680 86.5 3.7e-185 645.2
Bhi01g00125 . 1 1106 Core DNA Replication Machinery Family AT1G08840 53.5 3.5e-301 1031.9
Bhi01g00124 . 1 1106 Core DNA Replication Machinery Family AT1G08840 53.5 3.5e-301 1031.9
Bhi01g02687 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.3 4.6e-115 411.8
Bhi10g00145 . 1 804 Core DNA Replication Machinery Family AT1G08130 66.3 1.5e-296 1016.1
Bhi10g00144 . 1 765 Core DNA Replication Machinery Family AT1G08130 62.9 4.3e-275 944.9
Bhi10g00145 . 204 804 Core DNA Replication Machinery Family AT1G49250 68.8 3.4e-241 832.0
Bhi10g00144 . 204 765 Core DNA Replication Machinery Family AT1G49250 64.6 5.6e-220 761.5
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003604 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 2 2 1 1 3 11 1 45
       

Transcriptome


Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi10g00804 Bhi_Chr10 FPKM 22.480587 25.410416 32.948532 33.259716 22.440376 16.272043 19.527386 49.241898 53.397709 53.127239