Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g00921 GGTTTAACTAGGTTCGTTTGTCCTCAGTGCGCGGTTGACCTCACCGTCGATCTCTCTAAGCTCCATCAGTTCTTCCCCTCCCGGCCGCCTCCTGAGGAAGTCAACGAGGGGTTTAGTACTGTGTTAAAAGCCTCATGAGGCATGTGCTTAGACATTCATGAGGTAGCCATTGAAGTGGAAAGAGAAGAAGATGAAGGTGGTACAGTGGGAGAGACATTTACAGAATATCACCCTCCTAAGCTATCTATAGGACCACTTCACCCGGACCCAGTTGTGGAGACATCCTCCTTATCTGCTGTCCAGCCTCCTGAACCCACTTATGATTTAAAAATCAAGGATGATTTAGAGAAGTCAAAAGCTCTTTCATGCTTGCAAATTGAGACCTTGGTATATGCTTCTCAGAGACATATGCACCACCTCCCAGATGATACCAGGGCGGGATTCTTTATTGGAGATGGAGCTGGTGTTGGTAAAGGTCGGACCATTGCCGGTTTATTGTGGGAAAATTGGCACCATGGGAGGAGGAAAGCAATGTGGATTTCGGTTGGTTCAGATTTGAAGTACGATGCTAGGAGAGACTTAGATGATGTTGGTGCATCGTGCATTAAAGTGCATGCTTTGAACAAGCTGCCATATTCAAAGCTTGACTCAAAGTCTGTGGGTATTAGAGAAGGAGTTGTCTTTTTGACGTATAGCAGCCTCATAGCATCTTCTGAACGAGGCCGTTCTCGCCTGCAGCAGCTTGTTCAGTGGTGTGGAACAGAATTTGATGGTCTCGTCATATTTGATGAGTGCCATAAAGCCAAAAATTTGGTACCAGAATCTGGAAGCCAGCCAACGAGGACAGGAGAAGCCGTTCTAGAGCTGCAGGATCGACTTCCTGAAGCTCGTATAATTTACTGCTCAGCCACCGGTGCATCTGAGCCACGCAATATGGGCTATATGGTCCGACTTGGGCTTTGGGGAACTGGAACTTCCTTCATTGACTTCCGGGATTTTTTAGGTGCACTAGAGAGAGGGGGTGTTGGGGCTTTAGAACTTGTTGCCATGGACATGAAAGCAAGGGGTATGTATTTGTGCCGCACGCTTAGCTACAGAGGAGCCGAATTTGAGATTGTGGAAGCACCATTAGAAGCTGAGATGATGGAAATGTATACACTAGCAGCTGAATTTTGGGCAAAGTTGCGGGTAGAATTGATGACAGCAAGTGCATATGTTACTAGTGACAAGCCTAGTGCCAATCAACTTTGGCGATTATTTTGGGCAAGCCATCAGCGTTTCTTCAGGCACATGTGTATGTCTGCCAAGGTTCCTGCTACTGTTAGACTAGCTAAGCAAGCATTATTGGAAGATAAGTGTGTCGTCATTGGTCTGCAAAGTACTGGAGAGACACGCACTGAGGAAGCTGTGACAAAATATGGTCTTGAGCTTGATGATTTTGTTTCTGGACCTCGAGAACTATTGCTTAAATTTGTGGAAGAAAACTACCCTTTGCCTGAAAAGCCCGAAACCCTACCTGAGGAGGGAAGTGTCAAGGAACTTCAAAGGAAGAGACACTCGGCAACTCCTGGCACATCACTAAATGGGAGGGTAAGGAAGGCTGCAAAGTGGAAACCTCCAAGTGATGTCGAAAGTGATGAAGAATCTGAAACTGATTCTGCTGCTGAATCTACCGAATCAGATGATGAGTTTCAGATTTGTGAGATATGCAATGCCGAAGGGGAAAGGAAAAAATTACTTCGATGTTCCTGTTGTGAGCAATTTTTTCATCCTGCCTGTCTCGACCCTCCTCTCTTGGATACAGAAACTGCAGAATGGTCATGTGAATCTTGCAAGGAGAAGACAGATGAGTATCTTAAAGAAAGAAAAGCTGTTATAGCTGAACTTTTGAAAAGGTATGATGCTGCTTCAGATCGTAAGTCTAATTTGTTGGCAATTATTCGTTCATTGAATCTTCCAAACAATCCTTTGGATGATATTATTGATCAGCTTGGTGGCCCTGATAAGGTTGCAGAAATAACCGGAAGAAGGGGAATGCTTGTAAGGGCCCCCAATGGAAAGGGTGTTACTTACCAGCCACGGAACTCGAAGGATGTGGCTATGGAGATGGTCAATATGCATGAGAAACAACTGTTTATGGATGGTAAGAAGTTTGTTGCTATCATTTCTGAAGCTGGATCTGCTGGTGTTTCACTGCAGGCAGACAGAAGAGCTGCAAATCAGAAAAGAAGAGTTCATTTTACTTTAGAACTCCCTTGGAGTGCTGATCGAGCTATTCAACAATTTGGACGGACTCATCGCTCTAATCAAGCTTCAGCACCAGAATACAGGCTACTTTTTACGAATCTCGGTGGAGAACGCAGGTTTGCATCAATTGTTGCCAAGAGATTAGAATCGCTTGGAGCCTTAACTCAAGGAGATCGAAGGGCCGGGTTGTCACTAAGTGCATACAATTATGACAGTGCTTATGGGAGAACGGCCTTGACGATGATGTATAGAGGAATAATGGAGCAGGATGCCCTGCCCGTTGAACCTCCTGGTTGCTCATTTGAGAAACCTGATACAATCCGCGATTTTATTGAGAATGCAAAAGCTGCTCTTAATTCTGTGGGAATAATTAGGGACACTGTACTTGGGACTGGAAAGGACTTTGGAAAGACCTCTGGTCGTATTGTTGAGTCAGACATGAATGATATTGGACGTTTTCTTAATCGACTTTTGGGCCTCCCGCCTGAGATTCAGAATAGGATTTTTGAGTTATTTGTCAGCATGTTGGATCTTCTAATTCAGAAAGCACGCATTGAAGGGAATCTTGATTCTGGAATTGTTGATATGAGAGCCAATGTTATTGAATTAAGAGGAAGTCCAAAGACAGTTCATGTTGATCCGGTTTCTGGGGCATCAACTATGCTGTTTACTTTCTCTTTGGATCGTGGTATGACCTGGGAGTCTGCAAGCACCATTCTTGATGAGAAGCAAAAGGATGGGCTTGGTTCAACCAATGATGGATTCTATGAATCCAGGAGGGACTGGTTGGGAAGATGCCACATCATATTAGCCTTTGAAAGTTCCGTTCCTGGAATGTATAAAATTGTACGCCCAGCTGTTGGGGAGTCGCTAAGGGAAATGTCTCTCTCTGAGTTACGGAACAAATACCGAAAAACATCATCTTTGGAGAAGGCTCGTAATGGGTGGGAAGATGAGTATGACATTTCCTCAAAACAGTGCATGCATGGACCAAATTGTAAGCTTGGCAACTTTTGTACGGTTGGCAGGAGAATACAGGAAGTTAATGTTTTGGGTGGCCTTATTCTTCCTGTTTGGGGAACTATTGAAAATGCCCTTTCTAAGCAGGCCCGCCAAAGTCACCAGCGGCTTCGTGTAGTACGTATAGAAACCACAACAGATAGACAGAGAATAGTTGGTCTGTTTGTTCCAAATGCAGCAGTTGATTCAGTGCTTCGAGGTTTGGCATGGGTACAAGATGTAGATGATTGAAATCAAAGTAGTGATTCTGTTTTATCCGTGTACTATTTGTGTGCTGCTCCTAACAAGAAGCTTCAGTTTTTTGGAGGAGTTTGAAGAACAGCTGATTCTATTTTTTTCTGCACCGTGCGATGGAAACTGTGCAGTCTTATAGTTATTATTTTTTTGGGGTATATATGATTTGTATATTTGGCAATGCTGCGTTAGATGATATTAGGAGGAGCATTATGTTAATGTTTATTATCCCTTCTAAATCCTAATCTTAATTTCATTTTCATTTTCTTTTGTATGTATATCCAATTACAGTTGGAAATAGAAAATCTCCCCCCTTTGTACAATTTTTTGATTGGTTGAACCAACAGAAATTCCATATTTAATATATTCGTGCTTACGTTTCCATA 3887 43.35 MCLDIHEVAIEVEREEDEGGTVGETFTEYHPPKLSIGPLHPDPVVETSSLSAVQPPEPTYDLKIKDDLEKSKALSCLQIETLVYASQRHMHHLPDDTRAGFFIGDGAGVGKGRTIAGLLWENWHHGRRKAMWISVGSDLKYDARRDLDDVGASCIKVHALNKLPYSKLDSKSVGIREGVVFLTYSSLIASSERGRSRLQQLVQWCGTEFDGLVIFDECHKAKNLVPESGSQPTRTGEAVLELQDRLPEARIIYCSATGASEPRNMGYMVRLGLWGTGTSFIDFRDFLGALERGGVGALELVAMDMKARGMYLCRTLSYRGAEFEIVEAPLEAEMMEMYTLAAEFWAKLRVELMTASAYVTSDKPSANQLWRLFWASHQRFFRHMCMSAKVPATVRLAKQALLEDKCVVIGLQSTGETRTEEAVTKYGLELDDFVSGPRELLLKFVEENYPLPEKPETLPEEGSVKELQRKRHSATPGTSLNGRVRKAAKWKPPSDVESDEESETDSAAESTESDDEFQICEICNAEGERKKLLRCSCCEQFFHPACLDPPLLDTETAEWSCESCKEKTDEYLKERKAVIAELLKRYDAASDRKSNLLAIIRSLNLPNNPLDDIIDQLGGPDKVAEITGRRGMLVRAPNGKGVTYQPRNSKDVAMEMVNMHEKQLFMDGKKFVAIISEAGSAGVSLQADRRAANQKRRVHFTLELPWSADRAIQQFGRTHRSNQASAPEYRLLFTNLGGERRFASIVAKRLESLGALTQGDRRAGLSLSAYNYDSAYGRTALTMMYRGIMEQDALPVEPPGCSFEKPDTIRDFIENAKAALNSVGIIRDTVLGTGKDFGKTSGRIVESDMNDIGRFLNRLLGLPPEIQNRIFELFVSMLDLLIQKARIEGNLDSGIVDMRANVIELRGSPKTVHVDPVSGASTMLFTFSLDRGMTWESASTILDEKQKDGLGSTNDGFYESRRDWLGRCHIILAFESSVPGMYKIVRPAVGESLREMSLSELRNKYRKTSSLEKARNGWEDEYDISSKQCMHGPNCKLGNFCTVGRRIQEVNVLGGLILPVWGTIENALSKQARQSHQRLRVVRIETTTDRQRIVGLFVPNAAVDSVLRGLAWVQDVDD 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18907019 18932882 - XM_039045141.1 Bhi10g00921 47262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g00921 1118 PANTHER STRAWBERRY NOTCH-RELATED 15 1118 IPR026741 GO:0006355
Bhi10g00921 1118 Gene3D - 69 269 IPR027417 -
Bhi10g00921 1118 ProSitePatterns Zinc finger PHD-type signature. 520 564 IPR019786 -
Bhi10g00921 1118 MobiDBLite consensus disorder prediction 452 472 - -
Bhi10g00921 1118 ProSiteProfiles Zinc finger PHD-type profile. 517 567 IPR019787 -
Bhi10g00921 1118 Pfam PHD-finger 519 567 IPR019787 -
Bhi10g00921 1118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 494 580 IPR013083 -
Bhi10g00921 1118 MobiDBLite consensus disorder prediction 498 513 - -
Bhi10g00921 1118 SMART PHD_3 519 565 IPR001965 -
Bhi10g00921 1118 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 663 763 IPR027417 -
Bhi10g00921 1118 PANTHER OS08G0223700 PROTEIN 15 1118 - -
Bhi10g00921 1118 Pfam C-terminal domain on Strawberry notch homologue 608 897 IPR026937 -
Bhi10g00921 1118 MobiDBLite consensus disorder prediction 452 513 - -
Bhi10g00921 1118 SUPERFAMILY FYVE/PHD zinc finger 510 570 IPR011011 -
Bhi10g00921 1118 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 282 IPR027417 -
Bhi10g00921 1118 Pfam P-loop containing NTP hydrolase pore-1 40 338 IPR039187 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g00921 - - - csv:101218295 2112.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g00918 Bhi-Chr10:18907019 Bhi10g00921 Bhi-Chr10:18907019 0 dispersed
Bhi10g00919 Bhi-Chr10:18907019 Bhi10g00921 Bhi-Chr10:18907019 0 dispersed
Bhi10g00920 Bhi-Chr10:18907019 Bhi10g00921 Bhi-Chr10:18907019 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1181 . . . . Bpe07g00481 . . . . . . . . . . . . . . . . . . . Cla02g01841 Cam02g1947 Cec02g1974 Cco02g2013 Clacu02g1928 Cmu02g1877 Cre02g2189 . . . . . . . Cme11g01655 . . . . . . . Bma12g00561 . . . . . . . . Cpe05g01023 Bhi10g00921 . . . . . . . . . . . . . . Csa06g01139 Chy11g01053 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008454 1 4 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2147 PF13872 AAA_34 1.40E-132 CL0023 Bhi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi10g00921 Bhi_Chr10 FPKM 14.929578 14.91048 12.930163 10.129925 14.771503 11.579476 11.837299 23.900194 22.967054 27.184052