Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g00922 TAATCTTTTACTTCTTTTGAATGGGTTGAGTTCCTGCTCACAAAGGTGATGTTACATCACAATTTGAGCCCCCCTTTTTCTCCCTTTATTCACCCATCCCACATCGAAAAAATTTCGATTTATTTTCGGTACAAAAATCTCTGAAATTCACCGGTTTCCTCATCTCCAGAATCCAATTCCTTTCTTCCTTTCTGTCGATTTCTCTACTTTTCGAAACCCAAGCTCTACAATATGCCCTAAACCTGGTTGAACGATATGGGAGGCTGGGCCAGCTCGTCTGCTAAACGGAGGAACGGCGGCGAAAAGGGTGGAAAAACGGCTGCCGTCAGCAAAGAACCACCGTCGCTTAAGAAGACTGACAGTGGTAGCGGCGGTGGCGGAAGCAGCCGTGGAAAGTCGTTGTGCCGGCCTGAGAAGAAGGTTTATTTCCCGAAGAAATATGGTTTCATTGCAGATAATTTCTCCTCTATTGACCAGGTTACCGCAGCCTTGAGAAAAGAAGGATTAGAATCGTCGAACCTCATCGTCGGAATGGATTTCACCAAAAGCAACGAGTGGACAGGTAAAGTATCGTTCAATAATCGGAGCTTGCACGCCGTTTCTGATTCTCCTAATCCCTACGAAAATGCTCTGTCAATCATCGGGAAAACTCTGGCTCCCTTCGACGACGACAGCTTAATTCCTTGCTTTGGTTTCGGCGACGCAACGACGCACGATCAAACGGTGTTCGGTTTTCACAGTGATAATACTCCGTGCCATGGATTCGAAGAAGTTATTGACTGCTACAAAAATATAATTCCGAATGTGCAACTTTCAGGGCCAACTTCTTACGGTCCTGTGGTTGAAGCTGCAATGGATATTGTGGAGAAGAGTGGTGGACAATTTCATATTCTTCTTATTGTTGCAGATGGACAAGTTACTCGAAGCTCCAGTGTTGGCGATGACGAATTGAGCGTTCAAGAGGAGAAAACAATCAAAGCAATTGTCGATGCAAGTGCATATCCTCTTTCGATTGTTCTTGTTGGAGTTGGAGATGGCCCTTGGGACAACATGAAGAAGTTCGACGACAAGATCCCAGCTCGGGATTTCGATAATTTTCAGTTTGTTAACTTCACTGAAATAATGTCGAAAAACCTCGGCACGCCCGAAAAAGAAGCAGCTTTTGCTTTAGCTGCACTAATGGAGGTTCCTTTCCAGTACAAAGCAGTCACAGAAATGGGTCTTATAGGACATGTGACAGGAAAAGCAAAACGCATTGTGCCACGACCCCCACCGGCACGTTATACTCGTCCTTCACGGCTGACTCCCATACCTAGCAACACCTCCTCAGCTTCTGCATTTGATGAACATAGCCAGGTCTGCCCCATTTGCTTGACCGCAGGAAAGGACTTGGCCTTTGGATGCGGCCACATGACCTGTAGGGAATGTGGATCAAGATTGTCCAATTGCCATATATGTCGCCAGCCTATCAGAAACCGAATAAGGCTATACACTGGGTGATTGGATCGCACCAAGAGGGTATTGAGACGATGTCAATGACAATCAGATGGATATGATGTACAGGAATCAAGGGTTAGACAATTAAGAAATGTATGTTGTATGGACAGAACTAGGACTGTTCTACTCATGGGTGTTGTGTGTGTGTGAGGTGAGGTTCAAATTCCCAATGGATGAGGACTCTGATGTACATAGGAAAAACAATGTGCTCATATGTAATTGTAAAAACAATGTAGTGTCAACTCCTTGTCAATATTTTATGATGCAAACAAGATTTCATGTGCTTACGCGTAAGCTTCTTTTAACCACTACTGGTTGTAATGAATAAGCTAATAGCAAAATTGTCATTAGCTCGA 1853 44.36 MGGWASSSAKRRNGGEKGGKTAAVSKEPPSLKKTDSGSGGGGSSRGKSLCRPEKKVYFPKKYGFIADNFSSIDQVTAALRKEGLESSNLIVGMDFTKSNEWTGKVSFNNRSLHAVSDSPNPYENALSIIGKTLAPFDDDSLIPCFGFGDATTHDQTVFGFHSDNTPCHGFEEVIDCYKNIIPNVQLSGPTSYGPVVEAAMDIVEKSGGQFHILLIVADGQVTRSSSVGDDELSVQEEKTIKAIVDASAYPLSIVLVGVGDGPWDNMKKFDDKIPARDFDNFQFVNFTEIMSKNLGTPEKEAAFALAALMEVPFQYKAVTEMGLIGHVTGKAKRIVPRPPPARYTRPSRLTPIPSNTSSASAFDEHSQVCPICLTAGKDLAFGCGHMTCRECGSRLSNCHICRQPIRNRIRLYTG 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18942708 18953086 + XM_039045413.1 Bhi10g00922 47263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g00922 414 SUPERFAMILY RING/U-box 364 409 - -
Bhi10g00922 414 Pfam Copine 111 324 IPR010734 -
Bhi10g00922 414 CDD RING-HC_RGLG_plant 368 412 IPR045317 GO:0061630|GO:0070534
Bhi10g00922 414 ProSiteProfiles Zinc finger RING-type profile. 369 402 IPR001841 -
Bhi10g00922 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 355 413 IPR013083 -
Bhi10g00922 414 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG4 46 413 - -
Bhi10g00922 414 SUPERFAMILY vWA-like 88 270 IPR036465 -
Bhi10g00922 414 MobiDBLite consensus disorder prediction 1 49 - -
Bhi10g00922 414 SMART VWA_4 86 289 IPR002035 -
Bhi10g00922 414 MobiDBLite consensus disorder prediction 335 358 - -
Bhi10g00922 414 Pfam Zinc finger, C3HC4 type (RING finger) 367 406 - -
Bhi10g00922 414 PANTHER COPINE FAMILY PROTEIN 1 46 413 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g00922 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - csv:101218058 714.916
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g00922 Bhi-Chr10:18942708 Bhi11g01574 Bhi-Chr11:45582496 6.71E-154 dispersed
Bhi10g00922 Bhi-Chr10:18942708 Bhi07g01827 Bhi-Chr7:49631284 4.57E-162 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1179 . . . . Bpe07g00480 . . . . . . . . . . . . . . . . . . . Cla02g01840 Cam02g1946 Cec02g1973 Cco02g2012 . . Cre02g2188 . . . . . . . Cme11g01654 . . . . . . . . Sed05g3319 . . . . . . . Cpe05g01024 Bhi10g00922 Tan05g0573 Cmetu11g1928 . Hepe08g0658 . . . . . . . . . . Csa06g01141 Chy11g01051 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002870 1 4 2 0 1 1 1 2 2 2 1 1 3 2 2 3 1 3 3 2 2 2 1 2 2 2 2 2 2 1 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi10g00922 Bhi_Chr10 FPKM 10.672641 9.30103 10.101324 8.77529 11.209727 11.596046 15.065737 18.08791 15.710264 17.23406