Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g00929 GAACCTGCGCAGTCACTGATGACTGATTTAAAAACGTTGAAAAATCTTTCCCAGAACATGGTGTACATCAGTTGGACAGATGTTGAGTGGAGAAGACGAGTATTAATTTGTTAATTGCTGCAGCCATTTTTGAACTCCAAAGAGGAAGAAGAAGAAACATCAGAGATCGACAATGACTATGACGGTCGCTGCAAGAGTAATCGCAACAGCTCGATCAGTGGTTCGATCGAGCAGGCTTCCTCTTCTATCTCAATCTTCTTCGCAGAAATCTCACTCCCACACTCTTCTCATTCGTCAGATGAGCTCGGAGGCGCAGAGCATTGCTACTCGTCTTCACAGTTCTGGATTGTTACGAAGCCAAGGCCTCATTGGAGGGAAGTGGATTGATGCTTATGATGGGAAGACCATTAAGGTTCACAATCCAGCTAATGGTGAAGTTATAACCAATGTTCCGCTCATGGGTAAAAAGGAGACTGATGATGCTATTTCTTCAGCTTATGATGCTTTTAAGTCTTGGAGCAAGCTTACTGCAGCTGATCGGAGTAATCGCTTACGCAAATGGTATGAGCTCCTAATGGCCCACAAAGAAGAGATTGGACAGCTGATAACCTTAGAGCAAGGCAAACCCTTAAAGGAAGCTGTGGGTGAGACTAACTATGGAGCTAGCTTTATTGAGTTCTTTTCCGAGGAAGCAAAACGAGTATATGGTGACATAATCCAGCCAACTATAGCTGATCGTCGAATTTTGGTCTTGAAGCAGCCAGTTGGAGTTGTTGGTGTTATTACCCCTTGGAACTTTCCGTTGGCTATGATTACACGGAAGGTTGGGCCTGCTCTTGCATGTGGTTGTACAGTGGTCATAAAACCCTCTGAGCTTACCCCCTTGACAGCTTTAGCAGCAGCTGATCTCTCACTTCAAGCTGGAATACCCCCAGGTGTTGTGAATGTGGTTATGGGAGATGCTCCTGCTATTGGGGATGCTATACTTGCAAGTTCTCAGGTAAGAAAGATCACTTTTACTGGCTCAACAGCAGTTGGAAAAAAGTTGATGGCAGGTGCTGCTGGAACTGTTAAAAGGGTGTCCTTTGAACTTGGTGGTAATGCCCCTTGCATAATATTTGATGATGCAGATGTGGATGTTGCAGTAAAAGGAGCTATTGCAGCAAAGTTCCGGAATAGTGGACAGACTTGTGTTTGTGCCAATAGAATTCTTGTTCAAGAAGGAATATACGAGAAATTTACAAATGCTTTCTCAAAAGCCGTGCAAAATCTGCAAGTTGGTGATGGGTTTGGTGAAGGTGTAGCTCAGGGTCCTTTAATTAATGAAGCTGCCGTGCAGAAGGTTGAGAAATTTCTTCAAGATGCCACCACAAAGGGAGCCAAAGTTCTTCTTGGTGGTAAAAGACACAGACTTGGGATGACATTTTTTGAGCCAACAGTTCTTGCTGACGTAAATAGTGACATGCTTGTATCCAGGGAGGAAGTATTTGGTCCCGTGGCACCCTTGCTGCCATTCAAAACAGAGGAGGAAGCAATTGCTCTCGCTAATGACACCAATGCAGGATTAGCTGCTTACATATTCACAAACAATATTCAACGTTCATGGAGAGTGACTGAAGCTCTTGAATATGGAATGGTTGGTGTTAATGAAGGTCTAATTTCTACAGAGGTGGCTCCATTTGGTGGCGTTAAACAGTCGGGCCTTGGAAGGGAAGGGTCAAAATATGGGATGGACGAATATCTTGAGCTGAAATATGTTTGCTTGGGGAATATGGACCGCCCCTGATGAGCAAGGAACCTATCTGTCAGGGAATAATGGGCTTGGGCTTCTTCTTGGGCCCAGTGACCAAAATAAAAACATGGAGGCCCATAAGTCAAAATTCGTTTCCGTTTTTTCCCCTTCATTGTAAAAGAATAATAATGCAAGCTCGTTTGAGGAAATAAATAATATTTTGATGTTATTGAGTGTTTCCTCCTCA 1979 43.71 MTMTVAARVIATARSVVRSSRLPLLSQSSSQKSHSHTLLIRQMSSEAQSIATRLHSSGLLRSQGLIGGKWIDAYDGKTIKVHNPANGEVITNVPLMGKKETDDAISSAYDAFKSWSKLTAADRSNRLRKWYELLMAHKEEIGQLITLEQGKPLKEAVGETNYGASFIEFFSEEAKRVYGDIIQPTIADRRILVLKQPVGVVGVITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAADLSLQAGIPPGVVNVVMGDAPAIGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSFELGGNAPCIIFDDADVDVAVKGAIAAKFRNSGQTCVCANRILVQEGIYEKFTNAFSKAVQNLQVGDGFGEGVAQGPLINEAAVQKVEKFLQDATTKGAKVLLGGKRHRLGMTFFEPTVLADVNSDMLVSREEVFGPVAPLLPFKTEEEAIALANDTNAGLAAYIFTNNIQRSWRVTEALEYGMVGVNEGLISTEVAPFGGVKQSGLGREGSKYGMDEYLELKYVCLGNMDRP 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19072439 19087506 - XM_039045529.1 Bhi10g00929 47270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g00929 537 Pfam Aldehyde dehydrogenase family 70 529 IPR015590 GO:0016491
Bhi10g00929 537 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 57 534 - -
Bhi10g00929 537 CDD ALDH_F5_SSADH_GabD 81 531 - -
Bhi10g00929 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 76 523 IPR016162 GO:0016491
Bhi10g00929 537 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 309 498 IPR016163 GO:0016620
Bhi10g00929 537 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 57 534 - -
Bhi10g00929 537 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 305 312 IPR029510 GO:0016491
Bhi10g00929 537 SUPERFAMILY ALDH-like 58 535 IPR016161 GO:0016491
Bhi10g00929 537 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 333 344 IPR016160 GO:0016491
Bhi10g00929 537 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 81 527 IPR010102 GO:0009013|GO:0009450
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g00929 K17761 SSADH; succinate-semialdehyde dehydrogenase, mitochondrial [EC:1.2.1.24] - csv:101217352 944.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g00953 Bhi-Chr5:33483089 Bhi10g00929 Bhi-Chr10:19072439 4.30E-62 dispersed
Bhi06g01786 Bhi-Chr6:50022447 Bhi10g00929 Bhi-Chr10:19072439 2.53E-106 dispersed
Bhi06g01787 Bhi-Chr6:50022644 Bhi10g00929 Bhi-Chr10:19072439 2.53E-106 dispersed
Bhi06g01830 Bhi-Chr6:51308111 Bhi10g00929 Bhi-Chr10:19072439 1.66E-60 dispersed
Bhi06g01831 Bhi-Chr6:51308884 Bhi10g00929 Bhi-Chr10:19072439 1.68E-60 dispersed
Bhi09g00313 Bhi-Chr9:6655025 Bhi10g00929 Bhi-Chr10:19072439 6.62E-63 dispersed
Bhi09g00314 Bhi-Chr9:6655025 Bhi10g00929 Bhi-Chr10:19072439 6.62E-63 dispersed
Bhi12g01925 Bhi-Chr12:61305691 Bhi10g00929 Bhi-Chr10:19072439 1.48E-62 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1169 . . . . . . . . . . . . . . . . Cpe16g00704 . . . . . . . Cla02g01832 Cam02g1941 Cec02g1968 Cco02g2007 Clacu02g1921 Cmu02g1870 Cre02g2183 . . . . . . . Cme11g01643 . . . . . . . . Sed05g3313 . . . . . . . Cpe05g01029 Bhi10g00929 Tan05g0579 Cmetu11g2423 . Hepe08g0653 . . . . . . . . . . Csa06g01146 Chy11g01046 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi02g01117 . 5 504 Aldehyde Dehydrogenase Gene Family AT3G24503 71.7 2.0e-214 742.7
Bhi06g01785 . 27 536 Aldehyde Dehydrogenase Gene Family AT3G24503 53.8 3.8e-160 562.4
Bhi06g01786 . 27 536 Aldehyde Dehydrogenase Gene Family AT3G24503 53.8 3.8e-160 562.4
Bhi06g01787 . 27 536 Aldehyde Dehydrogenase Gene Family AT3G24503 53.8 3.8e-160 562.4
Bhi02g00432 . 76 560 Aldehyde Dehydrogenase Gene Family AT3G24503 54.9 2.8e-155 546.2
Bhi02g00432 . 1 560 Aldehyde Dehydrogenase Gene Family AT3G48000 75.5 5.9e-252 867.5
Bhi06g01785 . 1 536 Aldehyde Dehydrogenase Gene Family AT3G48000 76.2 7.5e-247 850.5
Bhi06g01786 . 1 536 Aldehyde Dehydrogenase Gene Family AT3G48000 76.2 7.5e-247 850.5
Bhi06g01787 . 1 536 Aldehyde Dehydrogenase Gene Family AT3G48000 76.2 7.5e-247 850.5
Bhi02g01117 . 20 504 Aldehyde Dehydrogenase Gene Family AT3G48000 55.7 3.9e-163 572.4
Bhi06g01785 . 1 380 Aldehyde Dehydrogenase Gene Family AT1G23800 77.2 4.8e-169 591.7
Bhi06g01786 . 1 380 Aldehyde Dehydrogenase Gene Family AT1G23800 77.2 4.8e-169 591.7
Bhi06g01787 . 1 380 Aldehyde Dehydrogenase Gene Family AT1G23800 77.2 4.8e-169 591.7
Bhi02g00432 . 59 410 Aldehyde Dehydrogenase Gene Family AT1G23800 78.4 3.8e-166 582.0
Bhi02g01117 . 20 348 Aldehyde Dehydrogenase Gene Family AT1G23800 55.0 3.1e-104 376.3
Bhi09g02693 . 7 485 Aldehyde Dehydrogenase Gene Family AT4G34240 63.9 3.8e-182 635.6
Bhi09g02694 . 18 502 Aldehyde Dehydrogenase Gene Family AT4G34240 63.3 3.5e-180 629.0
Bhi09g02695 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 64.0 1.8e-179 626.7
Bhi09g02694 . 89 500 Aldehyde Dehydrogenase Gene Family AT1G44170 71.6 3.8e-177 618.6
Bhi09g02693 . 72 483 Aldehyde Dehydrogenase Gene Family AT1G44170 71.6 3.8e-177 618.6
Bhi09g02695 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 70.6 1.0e-174 610.5
Bhi10g00318 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.7 2.8e-116 416.4
Bhi10g00318 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 55.3 5.0e-157 552.0
Bhi10g00929 . 33 536 Aldehyde Dehydrogenase Gene Family AT1G79440 76.8 1.6e-233 806.2
Bhi05g00953 . 15 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.8 2.2e-239 825.9
Bhi03g01706 . 177 640 Aldehyde Dehydrogenase Gene Family AT2G14170 63.0 3.8e-175 612.5
Bhi03g01703 . 177 640 Aldehyde Dehydrogenase Gene Family AT2G14170 63.0 3.8e-175 612.5
Bhi03g01707 . 177 640 Aldehyde Dehydrogenase Gene Family AT2G14170 63.0 3.8e-175 612.5
Bhi03g01704 . 177 639 Aldehyde Dehydrogenase Gene Family AT2G14170 63.2 3.2e-174 609.4
Bhi03g01705 . 177 613 Aldehyde Dehydrogenase Gene Family AT2G14170 58.9 4.2e-158 555.8
Bhi02g00392 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.4 3.9e-250 861.3
Bhi02g00392 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.5 2.2e-253 872.1
Bhi06g01830 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 90.2 6.5e-269 923.7
Bhi06g01831 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 90.9 4.2e-268 921.0
Bhi08g01411 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 77.8 2.0e-258 889.0
Bhi08g01410 . 6 502 Aldehyde Dehydrogenase Gene Family AT5G62530 80.5 1.7e-249 859.4
Bhi08g01409 . 21 511 Aldehyde Dehydrogenase Gene Family AT5G62530 70.9 9.5e-229 790.4
Bhi12g01925 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.0 1.0e-276 949.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004697 3 1 1 3 3 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 3 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi10g00929 Bhi_Chr10 FPKM 3.736979 5.475904 3.151971 5.70612 2.801255 1.884078 1.775595 3.85396 4.018672 4.430923