Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g00938 CAAATCGCTATTATCCGACGTGGCTTCCTTTCCTCGGCTCCGGTGACCACCACCGACGATACGCCGCCGTATCGCCACCTACTACATCAATAGTAACGCCATCAGGCTATTAAAATAATAACGAATTCCGCAGACTTTTGAAAATCTGTCATTTCGCATCCGTTTTTCTGCTAGGGTTTTTGCGTTTTGAAGCTTCTCCTTTTTCGTTTTTTTGTCGCCATTTCTTCTTCGATCAGCGAAGAAGCTATACGATCATGGCCTTCTCATCCTCCTTCGCTCGATCTGCCATTTCCTCTTCTCTGATCGAAGCTTCTCGTTCTGACTTGTCGCCGTCTAACTGCCGGAAGGCTTCATGCGTCGGGAGCTCTTTAAAGCTTCAATCTGGTGTTTTTGGAACTGCTGTCTCGAATGGGGCGTCTTCTTTACAGTTAAGGTCATCTAAAAGTCGAACTGTCCAACCCATCAAAGCTACGGCCACCGAGGCGCCTCCGACGATCCAAAAAACTCCGAGCAGTGGGAAGACCAAGATAGGAATCAATGGTTTTGGTCGAATTGGAAGACTGGTATTGCGAATTGCAACCTCCAGAGATGATATCGATGTTGTAGCAGTTAATGATCCATTTGTTGACGCCAAGTACATGGCTTACATGTTCAAATACGATTCTACCCATGGTGTTTTTAACGGAACCATCAAGGTTCTCAGTGATTCAACCTTGGAAATTAATGGGAAGCAGATCAAAGTTGTAAGCAAAAGGGACCCTGCAGATATCCCTTGGGGTGATTATGGGGCCGAATATGTTGTTGAGTCCTCTGGAGTTTTCACTACTAAAGAGAAGGCTTCAGCACACCTGAAGGGTGGTGCTAAGAAAGTTGTAATCTCAGCTCCATCAGCTGATGCACCTATGTTTGTAGTTGGTGTTAACGAAAAAACTTATAAGCCGACAATGGATATTGTTTCCAATGCAAGTTGTACAACCAATTGTCTTGCACCTCTCGCAAAGGTTGTTCATGAGGAATTTGGCATTGTTGAAGGTCTAATGACTACAGTGCATGCAACAACAGCAACACAAAAGACTGTCGATGGCCCTTCAATGAAGGATTGGAGAGGAGGCCGTGGGGCTGCACAAAATATAATTCCTAGCTCTACTGGTGCTGCCAAGGCTGTTGGCAAAGTTCTTCCGGAGCTAAATGGAAAGCTTACTGGAATGGCTTTCCGCGTCCCAACTCCCAATGTATCTGTTGTGGACTTAACTTGCCGACTTCAAAAGAGTGCTTCTTATGAAGATGTGAAGGCAGCAGTAAAATATGCATCCGAAGGTCCATTGAAAGGCATTCTTGGATATACCGATGAGGATGTTGTCTCTACAGATTTTCTTGGGGATTCGAGATCAAGTATTTTTGATGCAAAGGCTGGAATAGGTCTCAGTGCCTCATTCGTGAAGCTGGTGACTTGGTACGACAATGAATGGGGATACAGCAACCGAGTACTGGACCTTATTGAGCACATGGCAATGGTTTCAGCCTTCAATTAAATGACAGTGTCTTGTCATCGGCAAAGCCCCGAGCAGTTCTTGTGATTTTTGATCGTAAGTAGTTGGTTGAAGTGAGATAGGTTTCTATTTTTTTTTTTCTTGGAATGGAATCATTCGGTTGCTTGTGTAGAACAGTAGAAGCTAGTTTAAAATAAGGAATATTTGACATGTAAACGAGTTCATTCTTCCAGTTTAACATATCTGGACCCGGCAGATTCAATACAAGTAATTGTGGAAGAACCTTTCGGTCGTTTATCTTC 1792 43.97 MAFSSSFARSAISSSLIEASRSDLSPSNCRKASCVGSSLKLQSGVFGTAVSNGASSLQLRSSKSRTVQPIKATATEAPPTIQKTPSSGKTKIGINGFGRIGRLVLRIATSRDDIDVVAVNDPFVDAKYMAYMFKYDSTHGVFNGTIKVLSDSTLEINGKQIKVVSKRDPADIPWGDYGAEYVVESSGVFTTKEKASAHLKGGAKKVVISAPSADAPMFVVGVNEKTYKPTMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLQKSASYEDVKAAVKYASEGPLKGILGYTDEDVVSTDFLGDSRSSIFDAKAGIGLSASFVKLVTWYDNEWGYSNRVLDLIEHMAMVSAFN 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19193420 19198077 - XM_039044641.1 Bhi10g00938 47279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g00938 425 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 238 401 - -
Bhi10g00938 425 SMART gp_dh_n_7 90 239 IPR020828 GO:0051287
Bhi10g00938 425 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 9 423 IPR020831 GO:0016620
Bhi10g00938 425 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 91 192 IPR020828 GO:0051287
Bhi10g00938 425 Gene3D - 91 418 - -
Bhi10g00938 425 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 244 401 IPR020829 GO:0016620
Bhi10g00938 425 Gene3D Dihydrodipicolinate Reductase; domain 2 239 405 - -
Bhi10g00938 425 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 198 211 IPR020831 GO:0016620
Bhi10g00938 425 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 233 251 IPR020831 GO:0016620
Bhi10g00938 425 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 260 276 IPR020831 GO:0016620
Bhi10g00938 425 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 317 334 IPR020831 GO:0016620
Bhi10g00938 425 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 357 372 IPR020831 GO:0016620
Bhi10g00938 425 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 9 423 - -
Bhi10g00938 425 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 237 244 IPR020830 GO:0016620
Bhi10g00938 425 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 91 413 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Bhi10g00938 425 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 89 255 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g00938 K00134 GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] - csv:101203472 786.178
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi05g01995 Bhi10g00938 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi08g01716 Bhi-Chr8:48158143 Bhi10g00938 Bhi-Chr10:19193420 0 dispersed
Bhi08g01717 Bhi-Chr8:48162714 Bhi10g00938 Bhi-Chr10:19193420 0 dispersed
Bhi09g02843 Bhi-Chr9:75358129 Bhi10g00938 Bhi-Chr10:19193420 2.36E-111 dispersed
Bhi01g01845 Bhi-Chr1:39842094 Bhi10g00938 Bhi-Chr10:19193420 1.76E-107 transposed
Bhi04g02394 Bhi-Chr4:65505700 Bhi10g00938 Bhi-Chr10:19193420 0 transposed
Bhi10g00938 Bhi-Chr10:19193420 Bhi05g01995 Bhi-Chr5:61479378 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1147 Blo04g00463 Blo13g00601 . . . . . . . . . . . . Sed05g1836 Cpe04g00865 Cpe16g00709 Bhi05g01995 Tan02g0029 . Lac12g0041 Hepe02g0014 . . . . . . . . . . . . . . Csa07g01207 . Cme11g01634 . . . . Bpe15g00918 . . . Sed05g3308 . . . . . . Cpe15g00903 Cpe05g01033 Bhi10g00938 Tan05g0584 Cmetu11g0258 . Hepe08g0647 . . . . . . . . . . Csa06g01151 Chy11g01041 Cme01g01504
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002415 1 2 2 0 2 2 3 1 2 2 1 1 3 2 2 3 2 1 4 1 2 1 2 2 2 1 2 4 7 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi10g00938 Bhi_Chr10 FPKM 1.406061 1.105178 1.906969 1.346414 2.25729 1.917337 3.271399 9.370128 10.88145 8.339437