Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g00953 TAGAGGCATTTAGCCCAAATTTCTTTAGGCTTTCAATTCTCCATTCGTTATCTTCGTCAATTTATTCTCTCGCTCTGTTACAAAGAACGTCGGAAGAAAAGGAAAAGCGATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACGCTCGAAGTTGAGAGCAGTGATACCATCGATAACGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCCGATCAGCAGAGACTAATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACGCTTGCAGATTATAACATTCAAAAGGAGTCAACCCTTCACTTGGTCTTGAGGCTTAGGGGTGGGACTATGATTAAGGTCAAGACTCTGACCGGGAAGGAAATTGAGATTGACATTGAGCCAACTGACACAATTGATCGTATCAAGGAGCGGGTTGAGGAGAAAGAAGGGATTCCCCCTGTACAGCAAAGGCTCATTTATGCTGGTAAACAGCTTGGTGATGACAAAACGGCTAAAGACTATAACATTGAGGGTGGTTCTGTTCTCCATCTAGTGCTTGCCCTGAGGGGTGGTTATCTGTGAAAGCATTTTATCTGTCACCTACTGAAATTCTGAATTTTCAGTTTTTATTTTGTTGGTGCTGGATGAATGCATGAGCGGCATCTTGCATGTGTGTGGATAAATGGAAAAGTATTTGAGCCCAAACTTTTATCAATTACTCTGTAATAGAGATTTCATCTCCTGTGTATCTCCATCTCTTTTCAAGTTCAACATTAAGCCATTTGGTTTGTGTGGAAGGAGTTTGTAAAATTTAGTCCCAAAGTTTATCAATTTTTATTGGGGGAATGGAGCTCAATTATCATTA 857 41.07 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19408943 19411589 - XM_039044470.1 Bhi10g00953 47294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g00953 154 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Bhi10g00953 154 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Bhi10g00953 154 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Bhi10g00953 154 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Bhi10g00953 154 PANTHER - 1 152 - -
Bhi10g00953 154 PANTHER UBIQUITIN 1 152 - -
Bhi10g00953 154 PRINTS Ubiquitin signature 11 31 IPR019956 -
Bhi10g00953 154 PRINTS Ubiquitin signature 32 52 IPR019956 -
Bhi10g00953 154 PRINTS Ubiquitin signature 53 74 IPR019956 -
Bhi10g00953 154 CDD Ubl_NEDD8 79 152 IPR038738 -
Bhi10g00953 154 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Bhi10g00953 154 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Bhi10g00953 154 Gene3D - 78 153 - -
Bhi10g00953 154 Gene3D - 1 77 - -
Bhi10g00953 154 SMART ubq_7 77 148 IPR000626 GO:0005515
Bhi10g00953 154 SMART ubq_7 1 72 IPR000626 GO:0005515
Bhi10g00953 154 CDD Ubl_ubiquitin 1 76 - -
Bhi10g00953 154 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Bhi10g00953 154 SUPERFAMILY Ubiquitin-like 78 152 IPR029071 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g00953 Bhi-Chr10:19408943 Bhi11g00652 Bhi-Chr11:15192849 7.53E-82 dispersed
Bhi10g00953 Bhi-Chr10:19408943 Bhi09g01937 Bhi-Chr9:53907382 1.31E-79 transposed
Bhi10g00953 Bhi-Chr10:19408943 Bhi08g01778 Bhi-Chr8:51314315 7.95E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g00953 K12158 - csv:101214716 293.893