Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g00958 ATCATCATTAATTATTTTTGTTTTTGGAGGGTTCGTCCCAATCGTACGAAGGGAAAAAAGCAGCGTGAAAATGGCGAGCCCCGAACTCGAAGCACCAACAAAATTCTTCAGCTTAGCTCACTCTCCACTGCTTTTCATTCTTTCTTCCTCATAAACCCTAATCCTCCATTGCCAAATTCATCTCTTTTTCCTTCTGGGCATTTTCATTAGCCCTCATTCCCCCCCTTAATTTATCTCCTTCTACTCCAGCAATTGCTCGAGTCTTCGCAATTTTCCCACAATTCTTTTCTGCTCTTCGCCCATAAAGGATATGCATATGGAGAATTTATCATCTAGTGATCCATCGCATCAGGTGATGTACGAAAATAGTGATTCGAAGCACTCACAGGATGGGTTGGAGGATGGCTCTCGATGGTATTTTTCTCGGAAGGAATTAGAAGAATTCTCTCCTTCTAAACAAGATGGGATTGACTTGAAAAAGGAGACATATTTACGCAAATCATACTGTACATTTCTCCAAGATTTGGGAATGAGACTTAAAGTTCCCCAGGTAACCATTGCTACAGCAATAATTTTTTGCCATAGGTTTTTTCTTCGGCAGTCTCATGCAAAGAATGACCGAAGGACAATTGCGACAGTGTGTATGTTTCTCGCAGGAAAGGTTGAAGAAACCCCTCGCCCGTTGAAGGATGTTATCATGGTCTCATATGAAATCATCAACAAAAAGGATCCTACTGCAGCCCAGAAAATCAGGCAAAAGGAGGTGTATGAACGGCAAAAAGAGTTAATTTTACTTGGGGAGAGGGTTGTTCTCGCAACTCTTGGTTTTGATCTTAATGTGCACCATCCCTACAAACCCCTTGTTGAGGCTATTAAAAAATTCAAAGTTGCTCAAAATGCCTTGGCTCAAGTAGCTTGGAATTTCGTCAATGATGGATTGCGGACATCTCTTTGCTTGCAATTTAAGCCTCACCATATTGCGGCCGGTGCCATTTTCCTTGCTGCCAAATTTCTCAAAGTTAAACTCCCATCAGATGGGGAAAAGGTGTGGTGGCAAGAGTTTGATGTCACCCCACGGCAATTGGAGGAAGTCAGCAATCAAATGTTAGAACTTTATGAACAAAATCGATTGCCGCCTTCTGGTGAAGCTGATGGAAGCATTGGAGGTGGTCCCACTAATCAAACCCCTACGAAAGCTCCTACCAACAGTGAAGAACGTGGCATAGCGGACAATCATGCACTTGGTGCAGGTGACCAGCCATCAAGAGCAATGCAGAATCATAGCCTTGAAAGTTCAAATGTAGATTTTAGAAGTCCTTCCAATCACAAAACAGGTAGTGAATCTAAGGTTAGACAGGAGATGGAGCCATCGGCTTTCCATGACAAGGGACACGTTCAAAACTCTGTAAAGCATCAGTCAGAGGGATTGGTTGAGCAAGACCATGGAAATGATGTGAAAATAAATGAAGCAACAAGGGATGCAATGGAACTGAAAGATAAACATGTAATTCGAAATATAGATTTTAGGGAAGGTACACTCGGCAAATCTCAGGACGTTATTAAAAAGATCGATAAGGACAAAGTAAAGGCTGCACTCGAGAAACGAAGGAAGTCTCTTGGCAGCATGACCCAGAAAAAAGAATTGATGGATGAGGATGATCTCATTGAAAGGGAGTTGGAAGCTGGTGTTGAGATGGCTGCTGGCAGTGAGAAAAACAAGCGAGAACAGAGGCAAAGTTGGAATAAGTCATCGAATAAACAAGAATACGAAGATTCGTATCAAGACAAACATCGAGAGGACGATAAAGATGAGCATCCTCAACGAACGCGACAGTTGTCATATAATCTAGATTCTAGTAACATAGAAGAAGGGGAGTTTGCAAATGCTAATGAAGTTGGTTATGGGTATCAAGATTCCCCAAAGTCGAACAGTCGTAAGAGAGGCAGGGAGCTAACAGGATAGAGCTTTTGAAGGGAAAGCCAAGTTAAGTTGTGTCGTGTCGGTGCAGCTGGTCAAACAGAGAGGGACCACGAGAATCGTATACCGGAAAATTATGTTTGAGAAGTTTCACCAGAGGGTTTTTTTTTTTTTTTTTTTTTTTTT 2104 42.02 MHMENLSSSDPSHQVMYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIMVSYEIINKKDPTAAQKIRQKEVYERQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRLPPSGEADGSIGGGPTNQTPTKAPTNSEERGIADNHALGAGDQPSRAMQNHSLESSNVDFRSPSNHKTGSESKVRQEMEPSAFHDKGHVQNSVKHQSEGLVEQDHGNDVKINEATRDAMELKDKHVIRNIDFREGTLGKSQDVIKKIDKDKVKAALEKRRKSLGSMTQKKELMDEDDLIERELEAGVEMAAGSEKNKREQRQSWNKSSNKQEYEDSYQDKHREDDKDEHPQRTRQLSYNLDSSNIEEGEFANANEVGYGYQDSPKSNSRKRGRELTG 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19620294 19634561 + XM_039045634.1 Bhi10g00958 47299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g00958 550 MobiDBLite consensus disorder prediction 456 478 - -
Bhi10g00958 550 Pfam Cyclin, N-terminal domain 36 176 IPR006671 -
Bhi10g00958 550 MobiDBLite consensus disorder prediction 456 550 - -
Bhi10g00958 550 MobiDBLite consensus disorder prediction 284 301 - -
Bhi10g00958 550 MobiDBLite consensus disorder prediction 339 378 - -
Bhi10g00958 550 SMART cyclin_7 182 267 IPR013763 -
Bhi10g00958 550 SMART cyclin_7 67 169 IPR013763 -
Bhi10g00958 550 Gene3D - 177 277 - -
Bhi10g00958 550 PANTHER CYCLIN 3 316 IPR043198 GO:0006357|GO:0016538
Bhi10g00958 550 PANTHER CYCLIN 315 493 IPR043198 GO:0006357|GO:0016538
Bhi10g00958 550 MobiDBLite consensus disorder prediction 318 338 - -
Bhi10g00958 550 CDD CYCLIN 176 237 IPR013763 -
Bhi10g00958 550 SUPERFAMILY Cyclin-like 32 177 IPR036915 -
Bhi10g00958 550 MobiDBLite consensus disorder prediction 1 31 - -
Bhi10g00958 550 SUPERFAMILY Cyclin-like 178 274 IPR036915 -
Bhi10g00958 550 MobiDBLite consensus disorder prediction 485 507 - -
Bhi10g00958 550 PANTHER - 315 493 - -
Bhi10g00958 550 PANTHER - 3 316 - -
Bhi10g00958 550 MobiDBLite consensus disorder prediction 273 378 - -
Bhi10g00958 550 MobiDBLite consensus disorder prediction 1 22 - -
Bhi10g00958 550 MobiDBLite consensus disorder prediction 508 522 - -
Bhi10g00958 550 Gene3D - 26 175 - -
Bhi10g00958 550 CDD CYCLIN 61 132 IPR013763 -
Bhi10g00958 550 PIRSF Cyclin_L 33 512 - -
Bhi10g00958 550 PIRSF Cyclin_L 451 548 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g00958 K15188 CCNT; cyclin T - csv:101220862 1024.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00195 Bhi-Chr4:4739677 Bhi10g00958 Bhi-Chr10:19620294 5.85E-116 dispersed
Bhi10g00958 Bhi-Chr10:19620294 Bhi12g01731 Bhi-Chr12:55945440 9.81E-75 dispersed
Bhi10g01768 Bhi-Chr10:44535352 Bhi10g00958 Bhi-Chr10:19620294 8.65E-22 dispersed
Bhi10g00957 Bhi-Chr10:19620294 Bhi10g00958 Bhi-Chr10:19620294 0 tandem
Bhi10g00958 Bhi-Chr10:19620294 Bhi10g00959 Bhi-Chr10:19620294 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1087 . . . . Bpe07g00462 . . . . . . . . . . . Cpe16g00717 . . . . . . . Cla02g01817 Cam02g1923 Cec02g1948 . . Cmu02g1852 . . . . . . . . Cme11g01601 . . . . . . . Bma12g00592 . . . . . . . . . Bhi10g00958 . . . Hepe08g0633 . . . . . . . . . . Csa06g01165 Chy11g01027 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000905 2 5 2 4 2 3 4 3 3 2 3 2 4 1 2 4 3 3 3 1 2 2 3 3 3 2 2 5 2 1 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi10g00958 Bhi_Chr10 FPKM 59.544365 50.693401 58.174095 51.932533 54.701118 55.506668 61.320374 73.556725 86.518883 63.76252