Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g01007 ATTCCAGCCACGGAGTTCCCAAGTCAAGCTGGAGAAGGATCTGCCTCTTCCCAAAAAAAAATGGGAAGAGGTAAGATTGAAATAAAAAGAATTGAAAATACTACAAATCGTCAAGTCACCTTTTGTAAGAGAAGAAATGGATTGCTCAAAAAAGCTTATGAATTGTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTACTCGTGGCCGTCTCTATGAATATGCAAATAATAGTGTTAGAGGAACGATTGAGAGGTACAAGAAAGCATTTGCTGACTCTTCCAATTCCGGATTATCAGTTGCGGAAGCTAATGTACAGTTTTACCAGCAAGAAGCCTCCAAGTTAAAGAGACAGATTAGGGAAATTCAGAACTCAAACAGGCATATTCTGGGAGAAGCACTCAGCTCATTATCATTAAAGGACCTCAAAAGTCTGGAGGGCAGATTGGAGAGAGGAATCAGCAAAGTTAGGGCTAAAAAGAACGAAACCTTGTGTGCAGAGATGGAATTCATGCAAAAAAGGGAAATGGAGCTTCAGAACCACAATAACTATCTGCGAGCACAGATTGCCGAACACGAAAGAATACAACAACAGCAACAACAACAACAAACGAACATGATGCAAAGGGCAACATATGAGACAGTGGGAGGACAATACGATGATCAGAATAGAAGTTATGGGGCTGTGGGGCTTATGGATTCCGACACTCATTACGCCCATCAAGACCATCTCACTGCCCTTCAGCTTGTTTAAATTTTATAACCCAAAAAAAAGAAGAAAAAAAAAAAAAGAGAGATTAAAGCTGCCTTTTTTCTTTTTTCTTTTTTTTTTTTTTTAAAAAAATTGTTGTTGTTGTTATTATTATTTCCGATCTGCAATTACCCAGGATGTCAAATAATACTGCCTTTTGAAGGTCCCTGCTTCTGGCTGAGATAATTCTCATGGTATTTATTTGTGTAGTGTTATATATTATGGTACAATCAAATGACTGAACATAGACTTCC 1013 38.2 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRGTIERYKKAFADSSNSGLSVAEANVQFYQQEASKLKRQIREIQNSNRHILGEALSSLSLKDLKSLEGRLERGISKVRAKKNETLCAEMEFMQKREMELQNHNNYLRAQIAEHERIQQQQQQQQTNMMQRATYETVGGQYDDQNRSYGAVGLMDSDTHYAHQDHLTALQLV 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20345472 20354025 - XM_039044747.1 Bhi10g01007 47348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g01007 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bhi10g01007 233 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi10g01007 233 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bhi10g01007 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bhi10g01007 233 Gene3D - 14 76 IPR036879 GO:0003677|GO:0046983
Bhi10g01007 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bhi10g01007 233 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 1 226 - -
Bhi10g01007 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bhi10g01007 233 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi10g01007 233 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Bhi10g01007 233 Coils Coil 81 108 - -
Bhi10g01007 233 PANTHER MADS BOX PROTEIN 1 226 - -
Bhi10g01007 233 Coils Coil 125 145 - -
Bhi10g01007 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi10g01007 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi10g01007 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g00234 Bhi-Chr6:5559007 Bhi10g01007 Bhi-Chr10:20345472 2.44E-87 dispersed
Bhi06g00235 Bhi-Chr6:5559278 Bhi10g01007 Bhi-Chr10:20345472 1.69E-89 dispersed
Bhi10g01007 Bhi-Chr10:20345472 Bhi10g01009 Bhi-Chr10:20345473 2.60E-174 dispersed
Bhi10g01007 Bhi-Chr10:20345472 Bhi10g01008 Bhi-Chr10:20345473 2.60E-174 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2157 PF01486 K-box 2.70E-25 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g01007 K09264 - csv:101217987 410.994