Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g01195 TATAGTCTGTTGCAGGCAGAGAAGATTCTCTCTCTTCTTTCTCTCTCCTCTACTAGAAACGTCTGAAGGAGAAGAAGCTCTTTATTTTAATGGCGGAAGCAGTACACGCGTCAACAAACTTTCACCATTGATCCTTTCCTTTCAAATTTTCAACTCTCCAACGCCATTCTTTACATTTATTATTATTTTTTCCATACTTTTTCCTCTCCGTGTTTCATTCCTACATAATCGTTTGAAAGTGCCCGTCCGATGGATTTCTCTCTCAAGTCTTTGAAATCTCACGCCTCTTACAAGTATGTAAGGAAGCTTTCTAGAGCAGATGCTACTCAAGATCAAGAGCAGCTTCCCATTCTTTCAGATCAGCAACATTCGATTATGGCGGTTTCCGATGCATCTGATCGGAAAGAGGTTATCGTCAAGGTTGATCAGGACGATGCTTCATTGAGAGCTAAGGAGTTGGTGAACACCAGTGGGAGGATTTGGAGGGAGTCCAGTTATGATTTCTGGAATGACAGTGATAATAGACGGGATAATGGCGATTGTGTTGGTAGGAGTGAGGATTTTGAGTTTAGGCAAGATAGGAAGGATGTGGAAGATCCACCGTCTAAGCTTATTGGACAGTTTCTTCACAAGCAGAAGGCGTCGGGAGAGATGTCTTTAGATATGGATATGGAAATGCTGGAACTACCACAGGATAAGACTCTGCTTCCTGCGGTGGCGGAATCTCCGATGCGACGGAGTTCGAGAGAGTTGAAGGTTTCGTTTGAGTCTATTTCAGAAATTTCTGAAAACGATTCGATGCGAAGACGGCACAGAGACTCTCTGCCGGTTGATGAAGAACATAGAGGACAGCAACCGAAGCAGCGTGATCGTCGAGCATATGGCAGCAATGGTGAAGATGATGGCGCTGCTGAGGTTTTGAGATGCACATCTAATTCGTCCTTTCAAAGAGATGTATCGTTCCAGAGGAAATCTAGCTTGCTTAGGGCTAAAACTAAGTCTAGATTGCTGGATCCACCTGAATACCAAGACCGGAGGTCAGGGCGTGTACCAACAAAATCAGGGCAAGTTCGCTCTGGTTTATTGTCAAAAGCCTTAGATGAGGAAGACGATGATCCATTCTTGGAAGAAGATCTTCCTGATGAGTATAAGAAGGCTAATCTCGGTGTTCTGACTCTGTTACAGTGGGCGAGTTTGATTTTGATAATCGCGGCACTGATTTGCACTTTGACAATTCGTTACTGGAGGAGAAAGAAACTATGGAAGCTTGAACTATGGAAATGGGAGGTTATGATTCTTGTTCTGATATGTGGAAGGCTGGTTTCTGGTTGGGGGATTAGGTTAATCGTCTTCTTCATTGAAAGAAACTTTCTATTGCGTAAGAGGGTTCTATACTTTGTTTATGGAGTCAGAAAGGCCGTCCAGAATTGTCTTTGGTTGGGTCTAGTTTTAATTGCCTGGAACTTCCTGTTTGATGACAAAGTTCAAAGAGAGGTAAAGAGCAATGCCTTAGAATATGTGACCAAAGTATTGATATGTCTTCTTGTAAGCACTTTGGTTTGGCTAGTAAAAACGCTGATGGTGAAGGTTTTGGCCTCTTCTTTCCATGTGAGTACATATTTTGATAGGATTCAAGATGCATTGTTTAACCAATATGTAATTGAGACACTATCAGGGCCTCCATTGATAGAGATTCAAAAGAACGAGGAAGAAGAAGAGAGGCTTGCAGAAGAGGTTATAAAGTTACAGAATGCAGGGGCTACTATCCCTCCTGATTTAAAGGCAACTGCCTTTTCAACAACTCAAAAGGGTGGGAGAGTGATTGGGAGTGGTGGGTTGCAGAAAAGTCCTCGTGGAAGAAGTGGCAAGCTATCTAGGACACTGTCTAAAAAGGGCGATGATGGTATAACAATTGATCACTTGCATAAACTTAGTCCTAAAAATGTGTCAGCTTGGAATATGAAGAGGTTGATGAACATCGTTAGACATGGGGCTCTTTCAACTTTGGATGAACAGATAAAAGATGCAACTGATGAGGACGAATCAACCACACAGATCAAGAGTGAATATGAGGCAAAAGTTGCTGCTAAGAAGATTTTTCTGAACGTGGCTAGGCAAGGTTCTAAATATATCTACCTCGAGGACTTGATGCGTTTCATGGAAAAAGATGAGGCTTCAAAAACCATGGGGCTCTTTGAAGGAGCATGTGAGAATAGGAAAATAAGCAAATCGTCATTGAAAAACTGGGTGGTCAATGCCTTTAGAGAACGGAGGGCCCTAGCTTTGACATTAAACGATACCAAAACAGCTGTGAACAAACTTCACCGTATGGTGAATATTTTAGTTTCTATCATTATTCTGGTTATTTGGCTATTGATTCTGGGTATAGCCACAAGCAAATTTCTCCTATTCGTGACCTCTCAACTTGTGCTTGTCGCATTTGTATTTGGAAATACTTGCAAGACTGTTTTTGAATCAATCATCTTCTTATTTGTGATGCATCCATTTGACGTCGGGGACCGATGCGAAATCGATGGCGTGCAGATGATTGTAGAAGAAATGAACATTTTGACGACCAGTTTTTTAAGATATGACAACCAGAAGATCATATTTCCGAACAGTCTTCTTGCAACTAAGGCTATCCACAATTTCTATCGTAGTCCTGACATGGGAGATGGTGTAGAATTCTGTCTTCACATATGTACTCCGCCTGAGAAAATTGCTATAATGAAACAAAGAATAATAAGTTACATTGAGGGCAAGAAAGAGCATTGGTGTCCTGCGCCAATGATTGTCCTCAAGGATGTAGAAGAGTTGAATAGAATGAGGATAGCAATATGGCTTACTCATAGAATGAACCATCAGGACATGGGGGAGAGGTGGACAAGGAGAGCTCTTTTAGTCGAAGAACTCGTTAAAATTTTCCAAGAGCTCGACTTGCAATACCGTCTCTTACCGCTCGATATCAACGTTCGTTCCTTGCCTCCAGTGAACTCTACTAGTCTTCCTTCTAGATAATTGGACAACCTATGCAAGTTGGACAACCTATGCAAGTTGAGTGAGGTAGACAAGGAAATCAACTCACATTATCAACCTTAAGTTTGTAAACGTTCTCGTTTCTCATTTTACAAAAAAAAAAGAGGGTATGCTTTTGTATCTATATTTATTGAGATAGATAATTCATGTAAAATGTCTTATTGATCCTTATATTTTACATTGGGAATCGATTTAAAATGTTCTACTTTTATTCAACAGCACAATTTGTTAGAT 3270 40.95 MDFSLKSLKSHASYKYVRKLSRADATQDQEQLPILSDQQHSIMAVSDASDRKEVIVKVDQDDASLRAKELVNTSGRIWRESSYDFWNDSDNRRDNGDCVGRSEDFEFRQDRKDVEDPPSKLIGQFLHKQKASGEMSLDMDMEMLELPQDKTLLPAVAESPMRRSSRELKVSFESISEISENDSMRRRHRDSLPVDEEHRGQQPKQRDRRAYGSNGEDDGAAEVLRCTSNSSFQRDVSFQRKSSLLRAKTKSRLLDPPEYQDRRSGRVPTKSGQVRSGLLSKALDEEDDDPFLEEDLPDEYKKANLGVLTLLQWASLILIIAALICTLTIRYWRRKKLWKLELWKWEVMILVLICGRLVSGWGIRLIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSNALEYVTKVLICLLVSTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIQKNEEEEERLAEEVIKLQNAGATIPPDLKATAFSTTQKGGRVIGSGGLQKSPRGRSGKLSRTLSKKGDDGITIDHLHKLSPKNVSAWNMKRLMNIVRHGALSTLDEQIKDATDEDESTTQIKSEYEAKVAAKKIFLNVARQGSKYIYLEDLMRFMEKDEASKTMGLFEGACENRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNILVSIIILVIWLLILGIATSKFLLFVTSQLVLVAFVFGNTCKTVFESIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTSFLRYDNQKIIFPNSLLATKAIHNFYRSPDMGDGVEFCLHICTPPEKIAIMKQRIISYIEGKKEHWCPAPMIVLKDVEELNRMRIAIWLTHRMNHQDMGERWTRRALLVEELVKIFQELDLQYRLLPLDINVRSLPPVNSTSLPSR 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26206649 26211045 + XM_039044826.1 Bhi10g01195 47536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g01195 922 MobiDBLite consensus disorder prediction 179 215 - -
Bhi10g01195 922 SUPERFAMILY Sm-like ribonucleoproteins 742 801 IPR010920 -
Bhi10g01195 922 Gene3D - 752 801 IPR023408 -
Bhi10g01195 922 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 6 920 IPR016688 -
Bhi10g01195 922 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 6 920 - -
Bhi10g01195 922 MobiDBLite consensus disorder prediction 179 219 - -
Bhi10g01195 922 PIRSF Memb_At2g17000 37 922 IPR016688 -
Bhi10g01195 922 Pfam Mechanosensitive ion channel 694 896 IPR006685 GO:0016020|GO:0055085
Bhi10g01195 922 MobiDBLite consensus disorder prediction 524 548 - -
Bhi10g01195 922 Coils Coil 482 505 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g01195 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101210264 1618.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g01668 Bhi-Chr5:54737602 Bhi10g01195 Bhi-Chr10:26206649 0 dispersed
Bhi05g01669 Bhi-Chr5:54737602 Bhi10g01195 Bhi-Chr10:26206649 0 dispersed
Bhi10g01195 Bhi-Chr10:26206649 Bhi12g01438 Bhi-Chr12:46336647 2.25E-177 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00939 . 10 693 Mechanosensitive Ion Channel Family AT5G10490 56.5 2.6e-196 682.9
Bhi11g00900 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00903 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00902 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00901 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00904 . 1 604 Mechanosensitive Ion Channel Family AT5G10490 60.8 1.7e-187 653.7
Bhi04g00939 . 10 673 Mechanosensitive Ion Channel Family AT1G58200 57.6 4.8e-198 688.7
Bhi11g00900 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00903 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00902 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00901 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00904 . 1 570 Mechanosensitive Ion Channel Family AT1G58200 56.8 4.5e-164 575.9
Bhi10g01195 . 43 920 Mechanosensitive Ion Channel Family AT1G53470 55.9 8.2e-259 891.0
Bhi05g01668 . 91 959 Mechanosensitive Ion Channel Family AT1G53470 50.9 4.0e-237 818.9
Bhi10g01195 . 43 918 Mechanosensitive Ion Channel Family AT3G14810 53.6 1.4e-247 853.6
Bhi10g01195 . 43 920 Mechanosensitive Ion Channel Family AT1G78610 59.6 3.1e-279 958.7
Bhi05g01668 . 59 959 Mechanosensitive Ion Channel Family AT1G78610 55.3 1.1e-268 923.7
Bhi05g01669 . 59 726 Mechanosensitive Ion Channel Family AT1G78610 51.7 2.1e-171 600.5
Bhi10g01195 . 216 920 Mechanosensitive Ion Channel Family AT2G17000 61.4 5.5e-236 815.1
Bhi05g01668 . 273 957 Mechanosensitive Ion Channel Family AT2G17000 57.9 3.2e-220 762.7
Bhi05g01669 . 273 725 Mechanosensitive Ion Channel Family AT2G17000 59.7 2.4e-143 507.3
Bhi09g03087 . 65 720 Mechanosensitive Ion Channel Family AT5G19520 50.6 3.6e-175 612.8
Bhi09g03089 . 65 720 Mechanosensitive Ion Channel Family AT5G19520 50.6 3.6e-175 612.8
Bhi09g03088 . 65 718 Mechanosensitive Ion Channel Family AT5G19520 50.4 3.4e-173 606.3
Bhi02g01835 . 58 750 Mechanosensitive Ion Channel Family AT5G12080 52.5 2.0e-194 676.8
Bhi09g03087 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 54.5 1.6e-186 650.6
Bhi09g03089 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 54.5 1.6e-186 650.6
Bhi09g03088 . 64 718 Mechanosensitive Ion Channel Family AT5G12080 54.2 5.5e-184 642.1
Bhi09g03090 . 79 725 Mechanosensitive Ion Channel Family AT5G12080 53.4 8.8e-182 634.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67