Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g01252 AAAAGGGATGTTCTATCGTTTCCCATTTCTTGGGTGTAAAATTCAATCCCGATTCCCTTCTATGAAAAACAAAATCCCCTGACAATCAAACAGTTTTAATGAAAATGGAGAACACGGGGATTTTGAAGGAGTGGTTTAATCGAGTCGATTCGGAGAATTCTGGAAGCATCACAGCTCCTCAGCTTCAGAATGCTCTGGCGGTTGGAAACCTCAACTTTCCCCACTCAATTGTGCAGCAAATGATCAGAAATGGAACTATGAGCTTCGAAGAGTTTGTAGCTCTCAACAAGTTCCTCCTTAAGCTTCAGCAAGCCTTCTCTGACTTGGAAAGAGGACGTGGTTATCTAGTACCCGATGATGTATACGAGGCATTGGTTAAAATTGGCTTCATGCTGGACTCTCCGGCTTTTTATACTGTCTGTGAGAGCTTTGATCAAAAGAAGAATGGGAAATTTCGGCTAGACGACTTCATATCTCTCTGTATATTTGTTCAATCAGCTGGGAATTTGTTTAATTCCTTTGATACAGCAAAACAAGGCAGGGTGACTCTAGATCTCAACCAGTTTGTCTATTGCACTGCTAATTGTAGAATATGAAAGTGTAAATATTTGACAAGGAGGGGACAACATTCTGCAGAAACTATTTGTGCGACCTGTGGATCTAGAATGGTGGTATATGAACCATGAACTTATTTTTCAGTAGCATGATGTATCTTGTTTGTTTATCTGTTGGCTAGATTTGATGCTGGAAAAGGTTCATCTGATTACAGTATTAGTAATTCATTTCTATACCTCTTCTATATTGCGGCTTTTGTGTATCAGTTATTCACATGATCAGTCAATATATTGGTTTATTTTGTTAGCTTCA 867 38.87 MKMENTGILKEWFNRVDSENSGSITAPQLQNALAVGNLNFPHSIVQQMIRNGTMSFEEFVALNKFLLKLQQAFSDLERGRGYLVPDDVYEALVKIGFMLDSPAFYTVCESFDQKKNGKFRLDDFISLCIFVQSAGNLFNSFDTAKQGRVTLDLNQFVYCTANCRI 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29142527 29146523 - XM_039044484.1 Bhi10g01252 47593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g01252 165 Gene3D - 1 163 - -
Bhi10g01252 165 PANTHER PEFLIN 6 161 - -
Bhi10g01252 165 PANTHER PEFLIN 6 161 - -
Bhi10g01252 165 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Bhi10g01252 165 SUPERFAMILY EF-hand 9 161 IPR011992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g01252 - - - csv:101211585 315.849
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g01252 Bhi-Chr10:29142527 Bhi10g01254 Bhi-Chr10:29142527 5.07E-120 dispersed
Bhi10g01252 Bhi-Chr10:29142527 Bhi10g01253 Bhi-Chr10:29142527 1.01E-95 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g199 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g0634 . . . . . . . . Bhi10g01252 Tan05g1059 Cmetu11g1933 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011282 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31