Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g01287 TTTGCTTTTTGAACCTTTTTGTCACATTTTTCTGTACACTCATCATATGATATGCCCACATCCACATCTCCCCCTCTCATCCTCCTCTCTGTGACTCTCTCAACATAGATACAAAGTTAAAGCAGACATTCAAGAAACCTCCAGCTTCTAGGGTTTTGGAAAGAAATTCACCACATTTGGCAGTCCTTGAAGAACCTACTGTGGTTTGAAGATTTCATAGTTTGACAAGAGTTCTGAAAATTTGAACTCAGAGAGATCTGATAAGTCAATTACAAACATGGGTTTCATGTGTGATTTTTGTGGGGATCAAAGATCAATGGTTTACTGCCGATCTGATGCTGCTTGTTTGTGCTTATCATGTGATCGTAATGTCCATTCGGCTAACGCCTTGTCGAGGCGACATACAAGAACGCTGTTGTGCGAAAGATGCCATTTGCAGCCCTCCATGGTAAGGTGTATTGATGAGAGGGTTTCTCTGTGTCAAAATTGTGACTGGACAGGTCATGGCACATCTACCCTTGCTTCATCATCACACAAGAGGCAAACCATCAATTGTTACTCTGGTTGTCCATCAGCTGCAGAACTTTCTTCCATCTGGTCCTTTGTTTTGGATGTTCCCTCTGTAAATGATGCTTGTGAGAAAGAGTTGGGATTGATGAGCATTGCTGAGAATAGCTTGGGGGGTGCCTGGAGCCTTTCGGAGAACATCGCCGGTCAAAGAATGCCTGGATCAACTGAAGCCAGTGATGTTTGCAGCAGGGAAAAGTCAAATGTTATGGTCGGATCATCTTCACTCATTGATTTTGGTTCTAGGCCTTACACTTCAGATCAGCCAGTTGAATTGGCTAATGTGGCTTTACCCAAGTTTTGCTGTCCTGGAACAAAAGTTGCGGAATTCTGTGGTGAGGATGATGATCTCTACAAGGAGTTTGATATGGATGAAATGGATTTAAATCTTGAAAATTATGAGGAGCTATTTAGTATGAGCATTAATCATTCTGAAGAATTTTTCGAGAACAGTGGAATTGATAGCTTTTTTGAGGCAAAAGGCCTATCTTTTGAAGATTCAGTTTGCCACAGTGCAGTTGCTGCAGAGGGTTCTTCCATCGGAGTTGTCAAATCAATGCAGCCAGCCTGCAGCAATGGTGCCTCTGCTGACTCAGTGATGAGTACTAAAACCGAACCGATTCTCTGTTTTAATTCAAGGCAAGCCCAATCAGGTGTGTCATTTTCTGGCCTTACTGGTGAGAGTAGTGCTGGTGACCATCAAGACTGTGGAGCCTCTTCAATGCTTCTAATGGGTGAGCCTCCATGGTGTACCCCTGGCCCTGAAAGTTCCTTCCCATCTACTGATCGTAACAGCGCCGTCCTGCGTTATAAGGAGAAAAAGAAGACACGCAAGTTTGAGAAAACAGTGAGATATGCCACTCGCAAAGCGAGAGCCGATGTCAGAAGGCGTGTGAAGGGACGGTTTGTGAAGGCTGGAGAGGCCTATGATTACGACCCACTGAACCAGGCTAGAAGCTGCTGAGTACAATTTTTAACTATGCTTTACAAAAAGGAATGAATCACTCTGATGTTTGCTTGGAAAGATGCATTCTTTATTTATCTAACCAAGTGAATAATTTCAATGCATGATGATAAGCTATCTGATTATATCACAGGAAGGTTCAATGTCGCCCAAAGACGAAAGGTGGATTTGAAAAAGCGAGTACAGAAGGTTCAACGACTAAACTTTCCGGGGCAGATCGAAAAGGGTGTATCGACTAGAGCTTCAGTTTATGATCCCATCCAATAATACAGACAGCAGAAGATTTGCTCCAAGATTTAACTGGTAGTTGCCGTAAAGGCCAGCTCCTCTACAAATATCTGTTTACTGATACTTGTTGGTCAGAAACTACACTTACTTGACTATTTCTTTCTTTCTTTCTTTCTTTTTTGTTGATCTGAAACCTGGCTTGTTGGGTGACAAGACCCACCATTGCCAAAATATTATTTTGTCTGTATAGCACAAAGTCAGCATATTTTACAACACATTAAGATGAGTTGAGTTTAGTAGTAGTAGATTATGGTTACAAGGTTGAACATAAGATTTTCTCCTCTTTCCCAGTTGTAAATGTAAGGTAATAAATTGCATGTGCAGTTGAGAGAGATTTGGTAATTATACTCATACCTTGTAAATTCATTTTCTTTACTTTAATTCTTCTTCTTTTAAA 2216 41.34 MGFMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPSMVRCIDERVSLCQNCDWTGHGTSTLASSSHKRQTINCYSGCPSAAELSSIWSFVLDVPSVNDACEKELGLMSIAENSLGGAWSLSENIAGQRMPGSTEASDVCSREKSNVMVGSSSLIDFGSRPYTSDQPVELANVALPKFCCPGTKVAEFCGEDDDLYKEFDMDEMDLNLENYEELFSMSINHSEEFFENSGIDSFFEAKGLSFEDSVCHSAVAAEGSSIGVVKSMQPACSNGASADSVMSTKTEPILCFNSRQAQSGVSFSGLTGESSAGDHQDCGASSMLLMGEPPWCTPGPESSFPSTDRNSAVLRYKEKKKTRKFEKTVRYATRKARADVRRRVKGRFVKAGEAYDYDPLNQARSC 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30472702 30477391 + XM_039045922.1 Bhi10g01287 47628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g01287 417 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 416 - -
Bhi10g01287 417 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bhi10g01287 417 CDD Bbox1_BBX-like 47 91 - -
Bhi10g01287 417 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 416 - -
Bhi10g01287 417 CDD Bbox1_BBX-like 5 47 - -
Bhi10g01287 417 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bhi10g01287 417 Pfam CCT motif 360 402 IPR010402 GO:0005515
Bhi10g01287 417 ProSiteProfiles CCT domain profile. 360 402 IPR010402 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g01287 - - - csv:101216401 778.859
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g01507 Bhi-Chr5:51443076 Bhi10g01287 Bhi-Chr10:30472702 0 dispersed
Bhi05g01508 Bhi-Chr5:51443076 Bhi10g01287 Bhi-Chr10:30472702 0 dispersed
Bhi06g01274 Bhi-Chr6:38320092 Bhi10g01287 Bhi-Chr10:30472702 5.87E-06 dispersed
Bhi07g01276 Bhi-Chr7:39465592 Bhi10g01287 Bhi-Chr10:30472702 1.80E-08 dispersed
Bhi07g01277 Bhi-Chr7:39465592 Bhi10g01287 Bhi-Chr10:30472702 1.80E-08 dispersed
Bhi10g01287 Bhi-Chr10:30472702 Bhi10g01289 Bhi-Chr10:30473835 0 dispersed
Bhi10g01287 Bhi-Chr10:30472702 Bhi10g01288 Bhi-Chr10:30472702 0 tandem
Bhi10g01287 Bhi-Chr10:30472702 Bhi05g01505 Bhi-Chr5:51442402 1.52E-176 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00075 . 6 337 C2C2-CO-like Transcription Factor Family AT5G15850 50.9 6.6e-42 169.1
Bhi04g00075 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 60.9 1.9e-81 300.4
Bhi02g00794 CCT 5 373 C2C2-CO-like Transcription Factor Family AT5G57660 51.8 7.0e-68 255.4
Bhi04g00075 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 9.9e-54 208.4
Bhi10g01287 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 1.8e-90 330.5
Bhi10g01288 CCT 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 1.8e-90 330.5
Bhi10g01289 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 1.8e-90 330.5
Bhi10g01290 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 1.8e-90 330.5
Bhi05g01507 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 1.2e-89 327.8
Bhi05g01508 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 1.2e-89 327.8
Bhi05g01505 CCT 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 1.2e-89 327.8
Bhi05g01506 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 1.2e-89 327.8
Bhi10g01287 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01288 CCT 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01289 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01290 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi05g01507 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01508 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01505 CCT 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01506 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi10g01287 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01288 CCT 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01289 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01290 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi05g01507 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01508 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01505 CCT 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01506 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01795 . 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 54.2 1.6e-50 197.6
Bhi05g01796 . 1 200 C2C2-CO-like Transcription Factor Family AT1G75540 55.4 6.2e-50 195.7
Bhi01g02390 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 1.3e-56 216.9
Bhi03g00888 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.9 4.2e-50 195.3
Bhi03g00887 . 1 110 C2C2-CO-like Transcription Factor Family AT2G21320 70.9 2.2e-43 172.9
Bhi01g02390 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 1.7e-57 219.9
Bhi03g00888 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.9 1.7e-49 193.4
Bhi03g00887 . 1 103 C2C2-CO-like Transcription Factor Family AT4G38960 74.5 9.0e-43 171.0
Bhi05g01795 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 58.6 1.4e-54 210.7
Bhi05g01796 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 58.6 1.4e-54 210.7
Bhi10g01956 . 1 109 C2C2-CO-like Transcription Factor Family AT4G39070 72.5 2.1e-39 160.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2176 PF06203 CCT 6.50E-16 CL0281 Bhi TF