Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g01667 TTCAATAGATAAAATCATTAAGGACTTTGTGCTTAATAATTTACCCGGAAGGCAGCTATCAATGTCTCATAGTCATAGCACTTCTCGTTTCTCTTTCATTCTCAGAAGCTGTGCTCATCATTATGCAATTGCCCAAGCAAAGCAAGCCCACGCTCAAATCCTCATCCATGGCTTCCTTCCACATTTAACTCTTCTAACAGATCTTCTATTAGTGTATTGCAAATGTGGGTTTCTTCACGACGCCCGCAAGGTGTTTGATAAAATGACTCACAGAAACATGCACTCCTGGAATATCTTGATTGCTTCTTATGTTCACACTTCTTGGTACTTTGATGCAATAAATGTGTTTAATCAGTTTAGGGGCCTTGGTTTTCTCCCTGACCATTATACTTTGCCTCAGATGTTGAAGGCTAGTGTTGGTACTGGGGATGTTTATTTGGGGAAGAGACTTCATTGTTGGACAATAAGGCTTGGGTTTGAAGGATATGTTGTTGTAGACAGTACGGTTTTAGACTTTTACGCTAAATATGGGCTTGTGGGTGATGCTAAGAAGGTGTTTGATAATATGATTTATAAAGATACAATTTCTTGGAACGCAATGATTTCTGGGTATGGGAGGGCTGGGCTTTATGGAGATGCGTTGGATTGTTTCAAGCGCATGCTCTTTGAAGGAGTGAAGATGGATTTTATGACAATTCCTAGCGTTTTGAATGCTTGTGGAGGGGAAGGAGATTTGAGAAAAGGAAAAGAGATTCATTGCTTAGTTTTGAAGAGTATGGTATTTGCTGCTGATGTTGCAATTGGGAACTCATTGATTAATATGTATTCAAAGTGTGGAAGCCTGTTTGATTCTGAAAAGGTCTTTGGGAATATGAGCAGCTTGAATACTGTTACATGGACCACAATGATATCTTGTTATGGGGCTCATGGGAAAGGAGAGAAATCCTTGGTCCTGTTTAACAAAATGAAGGATTGTGGAATCCAACCCAATTCTGTAACACTGACAGCCGTTTTGGCTAGCTGCAGTCATGCAGGTTACATCAATGAAGGTTGGAGAATTTTCCAGTCCATTGTTTCAGATTTTAAGGTTGAACTGACGGTAGAACATTATGCTTGTGTTGTTGATCTTCTGAGTCGCTTTGGCTTTCTGCAGGAAGCGTTTCTGTTGATAAGAAATATGAAGCCTACCGCTTCTGCAAGCATTTGGGGTGCTCTGCTTTCTGGTTGTATGATCCACAGGAACCTTGAGATTGGAGAAATTGCAGCCAACCAGCTTTTCAAGTTGGAACCTACAAATCCAAGCAATTTTATAGCCTTGATTAGTATATATGAATCCCTTGGTATATCTCGTGGTGTTTGGCTGACTAGAGAGAAAATGCGAGACCTTGGTTTGACAAAAATCCCTGGTTACAGCTGCATAACCATTGATGGAGTTGTACATAAATTCTACGGAGGGGACAATTCTCACCCTTTGGATTTGAGAATATTTGAAACATTAAATGCAGTAAGACAAGCGGTTGTAAATGGCGAAATAACTTAAAATTCAAGGACACAGTTGAATAGATCCTATTCAAGTAGCAACCAGTCAAAACTCGAGTTGTTCAATCGGCCAACAGTTGGTCACAGCAACAACCACATTGTCTCGAGAGCATAAGTGCTTCTGTTCCGAGGTATTATTCAAACTTCTCAACCAAAGTCGATTAATATCACTTAAGGCTCGATCAGCATTCGTGACTATATACTGAAGATCAAAACAGTAAAGGGAAGAAGAAGAAGGAAAAAAAAA 1786 39.81 MSHSHSTSRFSFILRSCAHHYAIAQAKQAHAQILIHGFLPHLTLLTDLLLVYCKCGFLHDARKVFDKMTHRNMHSWNILIASYVHTSWYFDAINVFNQFRGLGFLPDHYTLPQMLKASVGTGDVYLGKRLHCWTIRLGFEGYVVVDSTVLDFYAKYGLVGDAKKVFDNMIYKDTISWNAMISGYGRAGLYGDALDCFKRMLFEGVKMDFMTIPSVLNACGGEGDLRKGKEIHCLVLKSMVFAADVAIGNSLINMYSKCGSLFDSEKVFGNMSSLNTVTWTTMISCYGAHGKGEKSLVLFNKMKDCGIQPNSVTLTAVLASCSHAGYINEGWRIFQSIVSDFKVELTVEHYACVVDLLSRFGFLQEAFLLIRNMKPTASASIWGALLSGCMIHRNLEIGEIAANQLFKLEPTNPSNFIALISIYESLGISRGVWLTREKMRDLGLTKIPGYSCITIDGVVHKFYGGDNSHPLDLRIFETLNAVRQAVVNGEIT 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 42191500 42193589 - XM_039045404.1 Bhi10g01667 48008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g01667 492 Gene3D Tetratricopeptide repeat domain 2 125 IPR011990 GO:0005515
Bhi10g01667 492 Gene3D Tetratricopeptide repeat domain 126 233 IPR011990 GO:0005515
Bhi10g01667 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 72 106 IPR002885 -
Bhi10g01667 492 TIGRFAM PPR: pentatricopeptide repeat domain 175 208 IPR002885 -
Bhi10g01667 492 TIGRFAM PPR: pentatricopeptide repeat domain 277 310 IPR002885 -
Bhi10g01667 492 TIGRFAM PPR: pentatricopeptide repeat domain 74 107 IPR002885 -
Bhi10g01667 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Bhi10g01667 492 PANTHER OS07G0578800 PROTEIN-RELATED 4 488 IPR045215 GO:0003723|GO:0009451
Bhi10g01667 492 Gene3D Tetratricopeptide repeat domain 244 444 IPR011990 GO:0005515
Bhi10g01667 492 Pfam PPR repeat family 275 321 IPR002885 -
Bhi10g01667 492 Pfam PPR repeat family 172 219 IPR002885 -
Bhi10g01667 492 Pfam PPR repeat 147 171 IPR002885 -
Bhi10g01667 492 Pfam PPR repeat 48 72 IPR002885 -
Bhi10g01667 492 Pfam PPR repeat 75 104 IPR002885 -
Bhi10g01667 492 Pfam PPR repeat 249 273 IPR002885 -
Bhi10g01667 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
Bhi10g01667 492 Pfam E motif 392 453 IPR046848 -
Bhi10g01667 492 PANTHER OS11G0213500 PROTEIN 4 488 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g01667 - - - csv:101220461 853.203
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g01667 Bhi-Chr10:42191500 Bhi01g02004 Bhi-Chr1:45609100 2.27E-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1282 . . . . . . . . . Cmo20g01073 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma20g01065 . . . . Bhi10g01667 . . . Hepe08g1246 . . Cla02g00059 . . . . . . Lsi10g00721 . . Cme11g00063
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014206 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 0 1 1 1 23