Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g01829 GGTGCTTTCTTTCCAGCTCCTCCCTCTAATTCTCTCTCCAATTTCTTGGTTCTCTGGCAATATATTCTTTGGTTCGAATACGGTGTTTGAAGGAACCCTCCGTTCAAAATCAGAGCCTTTCTGTTTCTTCATCGCATCGCCTTCTTTCCCTTCAATCGACGACGATTCTCAGATTGCCTTTCTCTTGGCAGTTCTTCTTTATCTACCTTCAAAGTTCAGATGTTCTCATCAAAAAGGCCCCTTGGATCTCATCAGCCCCGAATTGATGTGTTCTTTGCCATCAAAATAGTGAATCTATAATGCATTTATTGATCTTCTGTGATTTTGCTCAGACTTTATGGGAAAGAATCCTCCTTTGCTTCAGCTATCATATGGTCTTCCCAAATGACCCTCTCACTTTATTGAATTCTTTGCTTATTGGCCATCCGTTCAAAGCTAAGAGGGAGATATTGGGGACATTCATCATCAAAGCCTACCTATGGCTCATTTGGAATGAATGGAACAACTGGGTCTTCGAAGAAAAAGTGTCGAATTTCACTCGCTTCTTTGATCATCTTTTGTATACTGCTCTCACTTGGTGTAAATTCACCCCATATTTTTGTGATTACAATCTTACATCTCTTATTGCACGGTGGAAAACTATTATATGGAGCAACAGAATTCTGTGGACAAGGAGTCTCTAGTTGGTACTTGCAATAGAGATGGTGTTTCTTCAAGTGAAAGTAGCCACATTACAACTATAAATAATGATGAAACTAGAAGAAAAAATGAGAATACAAGCGACAAACCTAGTATTCCACATATATACAGGCAAGATATTGTAAAAAGCAAAGGTAGCGGTATGATAGGGATTGTGACTGAAGTTGCTGGTGATGCTGATTCAGACAGTGACATAACTGATGATGAAGATGAAGATGATGGTGGTGAGGATGGTGGGGATGATGACGGTTGTGATGGTGATGATGATGATGGAGAGAAAGAAGGTCAAAACAAGGAAAATTATGGCGATGACTGTAATGCTAAAAATTCCAACGGAGATAATTATAAGAGCCAACCTCTTCCTGATGATGAAGTTCGAGTCCTTTGGATGGATGAAAGTGAGACAACTCAGAATGTTAATGATTTAACAGTTATTGATAGAGGATTTGTACATGGTGATTTTGTTGCTGCTGTTTCTGATCCGACTGGGCAAGCAGGTGTTGTGGTAGATGTTAATATTTCTGTTGATTTGTTGGTTCCTGATGGATCAATTATGAAAGATATATCATCTAAAGACTTGAAACGTGTGAGAGATTTCACAGTGGGAGATTATGTGGTCCTTGGTCCATGGTTGGGTAGAATTGATGACGTATTGGATAATGTGACTGTGATGTTTGATGATGGCTCTAAGTGTAAAGTCACAAAGGCAGAGCCATTGCGGCTCAAACCAGTTTCTAAGAATATCCTTGAAGATGCAAACTTCCCTTACTATCCCGGTCAGCGTGTAAGGGCGTCTTCAACAGTTTTTAAGAATTCTAAATGGCTTTCTGGTTTATGGAAACCTAATCGCTTGGAAGGCACTGTCACTAAAGTTACAGTTGGTTCAGTGTTCATTTATTGGATAGCATCTGCTGGATATGGACCAGATTCTTCTACCACCCCAGCTGAAGAACAGACTCCAAAGAACTTAAGATTATTAACTTGTTTCTCACATGCAAATTGGCAGTTGGGTGACTGGTGTCTTCTTCCTCCTCCATCATTCTCCGCTGGCCTGACTAAGGACCCATCACAAACAGAACTTTCTGATTCAGTGACCAACTCATTAGATTCTGCACAACCGGTGGGTGCATGTGATTCAGAGGATGCCGCGGTAGATGAAGTAAGTGGGACAACTGAATCCACTGATCTTGATTCCATTAGTGCATGCGATGGAAATTATAGGAATCCTGTGTATAATAGTTTGCCTGAATCTAGTAGTTCTAGAGCTCTCAAGGAGACTACCCATGAGACTTGGCCTCTACATCGCAAAAAAATTCGTAAAGTTGTCGTCAGGAGGGATAAGAAGGCTAGAAAGAAAGAGGAAAACTTTGAGAGGGCCCTACTAATTATCAATACTAAGACAAAAGTCGATGTTGCATGGCAGGATGGCCGGACAGAACTTGGACTGGATTCAACAAGCTTGATTCCAATTGATAATCCAGGTGATCATGAATTTGTTCCGGAACAGTACGTGGTTGAGAAGGCCTCCGATAATGACGATGATGTTAGTGAAAGCAGGCGAGTTGGAGTTGTGAAAAGTGTTAATGCAAAGGAGCGAACAGCCTGTGTGAGGTGGTTAAAACCAGTCTCCAGGGCTGAGGATCCTCGAGAATTTGACATAGAAGAAATTGTTAGTGTGTATGAGCTAGAGGGGCATCCAGATTATGACTACTGTTATGGTGATGTGGTTGTTCGATTGTCCCCTGTTTCTGATTTTTCAGAGGCACTGTCTCTAGGAAACAATACAGAGGAATTAAAGCAGCAGAGTTCAACGGACGAGATGATGAGTTGTACAGAAAAGGCTTCAGGAAGCCAGAAAATGGAAGATCCATCATGTAGTGATGATTGCATCGACTTCTCAGATCTCTCTTGGGTTGGAAATATAACTGGTCTTAAGAATGGTGATATTGAAGTTACTTGGGCTAATGGCATGGTTTCAACGGTTGGCCCTCAAGCAATTTATGTTGTTGGTCGAGATGATGATGATGAATCAATTGCTGCTGGTAGTGAAGTAAGTAATGGTGCTGCAAGTTGGGAAACAGTTGATGATGATGAAATGGATTCTGTTGAGAATGCGAAGGAGGACATTGAACTGCAGGATACTGGTGCTAATTCTGAAGAGGAAGAAAGTGAACAGAATAATTCAGGAAGAAATCTAGCTCTTTCTGTTCCACTTGCTGCACTTCGATTTGTTACTAGATTGGCAGCTGGAATATTCTCACGAGGACCAAGAAATCCAGACTCAATGGATTTGGATTCCCACAGTGAAAGTGAGACTCAATCCTTGGAAATTCTTCAAGCTTCAGATGAAAAAGATTCTGGGCATCAGTCTAGCTCTCTTAAATCCAATTCGTTTGATGCTTCTGATATGAATTCTGATTGTGGAAGAGGAGAGGATAGTGTTGCTTCAGAGCCATCAGAAGTGTTAGAATCAGCAAAAGCTTCAAGCAACCTGAGGACTGCAGAATCAGATGCTTCAGCATGCCATGAGGATGGCACCTGCAGCTTCAAAGGCTTTGATATAGCCAAAGATCCTTTGGACCATTATTTTCTTGGTACGAATGGACAAACTAACAATGGAAGGAAATGGCTCAAGAAAATCCAGCAAGACTGGAGTATCCTCCAGAATAATTTGCCAGATGGGATATATGTTCGAGTCTACGAAGACCGTATGGACCTTTTAAGAGCAGTCATTGTTGGGGCTTACGGGACCCCTTACCAAGATGGCCTCTTCTTCTTCGATTTTCACCTCCCACCAGAGTATCCTGACGTTCCACCATCAGCATATTATCATTCAGGTGGGTGGCGGATAAATCCCAATCTTTATGAGGAAGGCAAAGTCTGCCTTAGCCTTTTAAATACTTGGACTGGCAGAGGAAATGAAGTGTGGGATCCAAAGTCCTCTAGCATCCTTCAAGTGTTGGTCTCGCTTCAGGGATTAGTGTTGAATTCTAAACCATATTTTAATGAAGCTGGATATGACAAGCAAGTTGGAACAGCAGAAGGAGAGAAAAATTCCTTGTCGTACAATGAAAACACTTTCTTATTAAACTGCAAGACAATCATGTATCTTATGAGGAAGCCTCCCAAGGACTTTGAAGAACTCGTTAAAGAACATTTCAGGAGGCGTGGATATTTCATCCTGAAGGCCTGTGATGCATACATGAAAGGTCACTTAATTGGCTCTCTCACAGAAGCTGCTTCTATAAGAGAAGAAAGCAATCCCAACTCGACTTCTGTCGGATTTAAGCTTATGCTCGCTAAGATTATCCCAAAGCTCTTCACGTCGTTGAACAAAGTCGGAGCTGATTGTCAAGATTTTAAGCATTTTCAACAGTTGTAGCATTAAAAAAAAGAGAAAAACTCCAAATGACAGGCTTTCATCATTTACATATAGCTGACAAGGTAATTTATTCCTTCAATTCATTCTCCATTCATGTCAAAGCCTTTTGTCACTTTACCCATTATGATCAATGATGCACCTTGTTTATAAGTTA 4235 41.09 MEQQNSVDKESLVGTCNRDGVSSSESSHITTINNDETRRKNENTSDKPSIPHIYRQDIVKSKGSGMIGIVTEVAGDADSDSDITDDEDEDDGGEDGGDDDGCDGDDDDGEKEGQNKENYGDDCNAKNSNGDNYKSQPLPDDEVRVLWMDESETTQNVNDLTVIDRGFVHGDFVAAVSDPTGQAGVVVDVNISVDLLVPDGSIMKDISSKDLKRVRDFTVGDYVVLGPWLGRIDDVLDNVTVMFDDGSKCKVTKAEPLRLKPVSKNILEDANFPYYPGQRVRASSTVFKNSKWLSGLWKPNRLEGTVTKVTVGSVFIYWIASAGYGPDSSTTPAEEQTPKNLRLLTCFSHANWQLGDWCLLPPPSFSAGLTKDPSQTELSDSVTNSLDSAQPVGACDSEDAAVDEVSGTTESTDLDSISACDGNYRNPVYNSLPESSSSRALKETTHETWPLHRKKIRKVVVRRDKKARKKEENFERALLIINTKTKVDVAWQDGRTELGLDSTSLIPIDNPGDHEFVPEQYVVEKASDNDDDVSESRRVGVVKSVNAKERTACVRWLKPVSRAEDPREFDIEEIVSVYELEGHPDYDYCYGDVVVRLSPVSDFSEALSLGNNTEELKQQSSTDEMMSCTEKASGSQKMEDPSCSDDCIDFSDLSWVGNITGLKNGDIEVTWANGMVSTVGPQAIYVVGRDDDDESIAAGSEVSNGAASWETVDDDEMDSVENAKEDIELQDTGANSEEEESEQNNSGRNLALSVPLAALRFVTRLAAGIFSRGPRNPDSMDLDSHSESETQSLEILQASDEKDSGHQSSSLKSNSFDASDMNSDCGRGEDSVASEPSEVLESAKASSNLRTAESDASACHEDGTCSFKGFDIAKDPLDHYFLGTNGQTNNGRKWLKKIQQDWSILQNNLPDGIYVRVYEDRMDLLRAVIVGAYGTPYQDGLFFFDFHLPPEYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQVGTAEGEKNSLSYNENTFLLNCKTIMYLMRKPPKDFEELVKEHFRRRGYFILKACDAYMKGHLIGSLTEAASIREESNPNSTSVGFKLMLAKIIPKLFTSLNKVGADCQDFKHFQQL 1144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 45792101 45801595 + XM_039046695.1 Bhi10g01829 48170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g01829 1144 MobiDBLite consensus disorder prediction 404 419 - -
Bhi10g01829 1144 MobiDBLite consensus disorder prediction 370 391 - -
Bhi10g01829 1144 MobiDBLite consensus disorder prediction 1 138 - -
Bhi10g01829 1144 Gene3D Ubiquitin Conjugating Enzyme 860 1129 IPR016135 -
Bhi10g01829 1144 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 37 1143 - -
Bhi10g01829 1144 SUPERFAMILY UBC-like 877 1060 IPR016135 -
Bhi10g01829 1144 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 23-RELATED 37 1143 - -
Bhi10g01829 1144 MobiDBLite consensus disorder prediction 840 854 - -
Bhi10g01829 1144 MobiDBLite consensus disorder prediction 32 46 - -
Bhi10g01829 1144 SMART ubc_7 896 1053 - -
Bhi10g01829 1144 MobiDBLite consensus disorder prediction 614 641 - -
Bhi10g01829 1144 MobiDBLite consensus disorder prediction 78 108 - -
Bhi10g01829 1144 MobiDBLite consensus disorder prediction 728 748 - -
Bhi10g01829 1144 CDD UBCc 896 1046 IPR000608 -
Bhi10g01829 1144 MobiDBLite consensus disorder prediction 770 855 - -
Bhi10g01829 1144 MobiDBLite consensus disorder prediction 1 31 - -
Bhi10g01829 1144 MobiDBLite consensus disorder prediction 120 135 - -
Bhi10g01829 1144 MobiDBLite consensus disorder prediction 370 419 - -
Bhi10g01829 1144 Pfam Ubiquitin-conjugating enzyme 898 1042 IPR000608 -
Bhi10g01829 1144 MobiDBLite consensus disorder prediction 614 640 - -
Bhi10g01829 1144 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 893 1053 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g01829 K10581 UBE2O; ubiquitin-conjugating enzyme E2 O [EC:2.3.2.24] - csv:101220698 2045.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g01828 Bhi-Chr10:45792100 Bhi10g01829 Bhi-Chr10:45792101 0 tandem
Bhi10g01829 Bhi-Chr10:45792101 Bhi10g01830 Bhi-Chr10:45792101 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g177 . . . . . . . . . . Cma02g00267 Cma20g00742 . Car20g00644 . . . . . . . . . . . . . . . . . Cone12ag1239 Cone8ag1294 . . Lsi10g00504 . . . . . . . . . . . . Cmo02g00263 Cmo20g00740 . . . . . Cpe05g01365 Bhi10g01829 . . . Hepe08g0305 . . Cla02g01178 Cam02g1257 Cec02g1266 Cco02g1305 Clacu02g1239 Cmu02g1206 Cre02g1521 . Csa02g01403 . Cme11g00370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005071 2 3 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 41