Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g01901 GAATACTACCACTGGTACAGAGTCTCACACAACGACCTCTCTCTCTCTCTCTCTCTCTATCCTCAATTCAATTCAGCCATTCCATTTCTCAAACTCTCTCTCTGTTTCATTCTTCCATGGAGGTCGTCTTCTCTTCCAAGCCTCAATCACTCACCTTCAATCCATGTCTTCCTCTCAATTCTTCTTCCTCCTTCTCCTACTCTCGCCTCCGCTTCGTCCGCCGTCAATTCCTTGGCTGTGGCCACAATCTCCGTCCTCCTGATGGCCTGCGCTCTCGACGAAGGTGCAGAAAGGTTGGCCTGCTTGTTCAGTCTCCCAGGTGCATTTTCCGAGCTACGTTCAGTTCGAATCCGGTTCTCATCGTTGTTGCTGTCGTTACTTTCTCCGCTGTCTCCTTCATCTACATGAACTTCAATAGGAGGAAGAAGAATGCGGTTGAGCGTTCCCAATCTCCAAAGCTTGCCTTATCTCAACTAGGTAGAGGCATCAACTGGTCTGTTGACGGTCAGATAATGGGCTTTAGGGATCACCATGGCGACTTTTTAGAGCAGAACATTGCCATAAAGGATAGAGCTGAAGAGAAAGGTTATTCTGTGGAAGAAGAGACTGTTCTGCAGCTTCAAAAATCTGGTCTATCACATGAGGCCAACATCACCGAAACATTGCAGCCATCTATTTCTGAAGTTACGACTTCTAAGGATAGCAATTCTCTGTTTTCAGATGACAGCGAAGCAACAGATCCTTCTCTTCTTTCTGATATATTCGAATCTGGCGTCCTGCAGCCTCTTATTTTTGCCAATGACATGACTGATTTAAAACTGAATGGATCTCATGTCAAATCCCACTCTGAATTGCCTGTTGTGGTTGATACAACTGAGCTTCCACCTGTTGCTGGTCCTTCATATAGTGTATATGATCAAGTGACTCAACATTTCAAAGCAGAGGGTGAGCTTCTAAAAGAGGAAAAATTAACTAGTTCCAACTCTCAAATTGAAGAACCAGGTAGAGAAGATATTTACATGTTCTATGAAGATACAAAGTCAAGTAATCAATCGGCAACTTCTTTGCATACTTCACATCTATACAACCAAAAATTTTCTTCAGTGATGATTAATGGTGTCTCTGGAGTAGCAGAATTAGTGTTAGAGGATTCTCTTCCAGTTGCAGGGTATGTTCAAAGGAAAGTACCTGATGCAAGATATAAGGAAGGTTCTTCAGGAAACATAAAAAAATCTGGAGGAGGCAACAATATTTCAAGACATGGGGAAAGAAAAGCACCCAGTCTGCATAAAGGAAAACTTGTGAATGGGTTACCCTATCCAAATGGGAAACATGTTCATTACAAAAATCTTCATGTAGATCAATATAAATCATATAATCAATGCCTGAAAGGTGGAAGGTTGCATGATTGTATCAAAATACTTCAAGATATGGAAAGAGAAGGCTTATTGGATATGAATAAGATTTATCATGGAAAGTTTTTCAATATTTGCAAGAGTAAAAAGGCTGTTCAGGAAGCTTTCCAGTACACCGCACTTATTCCAAACCCCACATTGAGTACATTTAATATGCTCATGTCTGTATGTGCAAGTTCTCAAGATTCTGACAGAGCTTTTCAAGTTGTGCGGCTTGTCCAGGAGGCTGGAATGAAAGCAGATTGCAAACTATACACTACTTTAATCTCAACATGTGGCAAAAGTGGAAAAGTGGATGCAATGTTTGAAGTATTTCACCGAATGGTTAATGCTGGAGTGGAACCTAATGTTCACACATATGGGGCACTTATTGATGGTTGTGCAAGAGCAGGTCAAGTGGCAAAGGCATTTGGCGTCTATGGAATAATGAGGTCAAAGAACGTGAAGCCAGACAGAGTTGTATTCAATGCACTTATCACTGCATGTGGTCAGTCGGGAGCGGTGGATCGTGCTTTTGATGTGCTGGCAGAAATGGGAGCTGAGTTACATCCAATAGAGCCTGATCATATTACAATTGGTGCTCTGATGAAGGCATGTGCAAATGCTGGTCAGGTTGATCGAGCAAGAGAAGTGTACAAGATGATCCATGATTATAAGATTAAGGGCACACCAGAGGTTTACACCATTGCTGTTAATTGTTGCAGTCAATCTTGCGATTGGGACTTTGCTTCCAATGTGTATCAAGAAATGACCAGGAAAGGAGTACAACCTGATGAGATTTTTCTCAGTGCATTAATAGATGTTGCAGGCCATGCTGGTAAGCTGGATGCTGCCTTTGAAATCTTAGGAGAAGCCAAGACACTAGGGATACGTGTTGGCATTGTGTCATATAGTTCGTTGATGGGTGCCTGTAGCAATGCTAAAAACTGGCAGAAGGCGTTGGCACTGTATGAGGATCTCAAGTCTATGAAATTGAGGCTAACTGTATCAACTGTGAATGCACTAATAACTGCACTGTGTGATGGGGAACAACTACAAATGGCTATGGATATTCTAACTGAAATGAAGGGATTAGGACTCTCCCCGAACAATATTACATACTCCATACTTACAGCAGCGAGTGAAAGGAATGATGATTTAGAAATTGCCCTCATGCTCCTCTCTCAAGCCAAAGAGGACGGGATAGTGCCAACCTTAACTATGTATAGGTGCATAATTGGCATGTGCTTACGAAGAATTTCAGAACCCTCTGCCCTTGATAGACCACTTTTGTCACTTGACTCTAAACTGCCTCAAGTCGATAGTGAGTGGACAACACAGGCCTTAATGGTGTACCGGGAAATAATTGCAGCCGGAATTGTTCCAAGCATTGAAGTTTTATCTCAAGTTTTGGGGTGCTTGCAGATTCCTTATGATCCCGTCTTAAAAAGTAGACTTATAGAAAACATAGGAGTAAGTGTTGACTCATCAAGATCTTCAAATCTCTGCTCCTTGATAGATGGCTTTGGTGAATATGACCCTCGCGCATTTTCACTGTTGGAGGAAGCTGCTTCACTTGGAGTTGCTCCATTTGTATCCCTCAAAGGAAATCCTATTGTTGTAGACGTCAAGGAGTTGCACATTCATACAGCTGAGGTTTACCTCTTGACAGTTTTGAAAGGTCTCAAACATCGGCTTGCCGCTGGTTCAAGGTTACCAAACATAATGATCTTACTGCCGAATGAGACGACACAAATTCTCTCTCCAAAGGGGGAGAAGACCATTAACCTTGCGGGAAGGGTTGGACAAGCAGTCGCGGCATTGTTGAGAAGACTTGGACTTCCATACCAGGGAAATGGATCAAGTGGAAAAATCAGAATAAATGGTTTGGCCTTGAGAAGATGGTTACAACCGAAACTTTCCGATTCTCTAAGTGGAAAACCAGGAGAGTTTAGCTCATTTCAGTCACGTCTAAGAAAAGGAATAAGCCATCAGCAGCGTAATATTCGCATGGGGAACCTATCATTGGATTAAAGAGGTAATGCAAAAACATTAAGGCAATTTAGGAATGTCGGATGCATTTTGCTACCATAAGCAGATGATCAGAACTGTTGAAACCAGTGACCTTCCACACCATTTTAATCCAACCCGCTGCGTTTTTAAAACTTCCTCGTAAATGTTAGAATAAGTAGGCTATCGGTTCTCTCAATGGCAATGCTAGTTGAGGGGGACATATGATGCGGTATAGAGCTTTCGGTTTCGTGGCAAATTCATGGGAAGAGAGGAGCAATTTGCAGAGCTGTCGTGAATCGATCTTTTACTAGAAAATATTTCTGGTCAAGAAGTTCATCACCAAAGTTGGTAGTCCAATTACGTGAATAAATCTTCCCTTGCTGCCCTTTACTGAGGTAATTTATGTTATATATACAAAATGGTTGTCAAATTTTGTAATGCAAAAACATATGACGACTTTATAAATTCATCCTTCTTTCCTTTTATTTTTGGAATGAGATGTAAAAATGTAAACTATTACCAAAAATTTATTGATTCATGAGTTTGTTCACTCAAACTGCTGAATCCAGAGAAGAAATCCGGGTATGTTTCTTGCCTCTTTCGACGTAATTATTAGTTCAATGAAAGCCAAACCTATTATTGACTCA 4054 41.39 MEVVFSSKPQSLTFNPCLPLNSSSSFSYSRLRFVRRQFLGCGHNLRPPDGLRSRRRCRKVGLLVQSPRCIFRATFSSNPVLIVVAVVTFSAVSFIYMNFNRRKKNAVERSQSPKLALSQLGRGINWSVDGQIMGFRDHHGDFLEQNIAIKDRAEEKGYSVEEETVLQLQKSGLSHEANITETLQPSISEVTTSKDSNSLFSDDSEATDPSLLSDIFESGVLQPLIFANDMTDLKLNGSHVKSHSELPVVVDTTELPPVAGPSYSVYDQVTQHFKAEGELLKEEKLTSSNSQIEEPGREDIYMFYEDTKSSNQSATSLHTSHLYNQKFSSVMINGVSGVAELVLEDSLPVAGYVQRKVPDARYKEGSSGNIKKSGGGNNISRHGERKAPSLHKGKLVNGLPYPNGKHVHYKNLHVDQYKSYNQCLKGGRLHDCIKILQDMEREGLLDMNKIYHGKFFNICKSKKAVQEAFQYTALIPNPTLSTFNMLMSVCASSQDSDRAFQVVRLVQEAGMKADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAELHPIEPDHITIGALMKACANAGQVDRAREVYKMIHDYKIKGTPEVYTIAVNCCSQSCDWDFASNVYQEMTRKGVQPDEIFLSALIDVAGHAGKLDAAFEILGEAKTLGIRVGIVSYSSLMGACSNAKNWQKALALYEDLKSMKLRLTVSTVNALITALCDGEQLQMAMDILTEMKGLGLSPNNITYSILTAASERNDDLEIALMLLSQAKEDGIVPTLTMYRCIIGMCLRRISEPSALDRPLLSLDSKLPQVDSEWTTQALMVYREIIAAGIVPSIEVLSQVLGCLQIPYDPVLKSRLIENIGVSVDSSRSSNLCSLIDGFGEYDPRAFSLLEEAASLGVAPFVSLKGNPIVVDVKELHIHTAEVYLLTVLKGLKHRLAAGSRLPNIMILLPNETTQILSPKGEKTINLAGRVGQAVAALLRRLGLPYQGNGSSGKIRINGLALRRWLQPKLSDSLSGKPGEFSSFQSRLRKGISHQQRNIRMGNLSLD 1103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 47704654 47715449 + XM_039045467.1 Bhi10g01901 48242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g01901 1103 Pfam Pentacotripeptide-repeat region of PRORP 629 770 IPR033443 -
Bhi10g01901 1103 Pfam Pentacotripeptide-repeat region of PRORP 482 617 IPR033443 -
Bhi10g01901 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 549 583 IPR002885 -
Bhi10g01901 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 796 830 IPR002885 -
Bhi10g01901 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 514 548 IPR002885 -
Bhi10g01901 1103 Gene3D Tetratricopeptide repeat domain 559 721 IPR011990 GO:0005515
Bhi10g01901 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 726 760 IPR002885 -
Bhi10g01901 1103 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 73 1103 - -
Bhi10g01901 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 479 513 IPR002885 -
Bhi10g01901 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 621 655 IPR002885 -
Bhi10g01901 1103 Gene3D Tetratricopeptide repeat domain 407 558 IPR011990 GO:0005515
Bhi10g01901 1103 TIGRFAM PPR: pentatricopeptide repeat domain 551 584 IPR002885 -
Bhi10g01901 1103 TIGRFAM PPR: pentatricopeptide repeat domain 728 760 IPR002885 -
Bhi10g01901 1103 TIGRFAM PPR: pentatricopeptide repeat domain 482 515 IPR002885 -
Bhi10g01901 1103 TIGRFAM PPR: pentatricopeptide repeat domain 517 550 IPR002885 -
Bhi10g01901 1103 TIGRFAM PPR: pentatricopeptide repeat domain 624 654 IPR002885 -
Bhi10g01901 1103 TIGRFAM PPR: pentatricopeptide repeat domain 659 692 IPR002885 -
Bhi10g01901 1103 TIGRFAM PPR: pentatricopeptide repeat domain 764 796 IPR002885 -
Bhi10g01901 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 656 690 IPR002885 -
Bhi10g01901 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 761 795 IPR002885 -
Bhi10g01901 1103 MobiDBLite consensus disorder prediction 362 394 - -
Bhi10g01901 1103 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 584 614 IPR002885 -
Bhi10g01901 1103 Pfam Pentatricopeptide repeat domain 806 842 IPR002885 -
Bhi10g01901 1103 Gene3D Tetratricopeptide repeat domain 722 871 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g01901 - - - csv:101204147 1975.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g01901 Bhi-Chr10:47704654 Bhi05g01136 Bhi-Chr5:40798898 1.54E-12 dispersed
Bhi10g01900 Bhi-Chr10:47704654 Bhi10g01901 Bhi-Chr10:47704654 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g85 . . . Bda08g00972 . . Bma05g00408 . . . Cma02g00333 Cma20g00774 Car02g00214 Car20g00677 . . . . . . . . . . . . . . . . . . . . . Lsi10g00458 . Chy11g00302 . . . . . . . . . Sed01g0228 Cmo02g00330 Cmo20g00774 . . . . Cpe16g00291 Cpe05g01307 Bhi10g01901 Tan05g1200 Cmetu11g2217 . Hepe08g0952 . . . . . . . . . . Csa02g01347 . Cme11g00424
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008629 1 2 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 35