Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g01925 ACTCCAGTTTGTTTCATCCCATTCTTCTGATGTCGAGCCCTCACCATTTTTATATTAGACGAAGTCTTGATTCATTCGCCAGTTTCTTCCGCCATTCTTGTCAATCCAAAAATCTTAAAGCCATTAAGAGGATTCACGCCCATTTGCTTAGAACCCGCTTCCAATTTTTCTCCCCGAATCTTCACTCTAAGCTTATACTATCCTACTCCCAAATCAACCCCAATTTTGATGCGCAAAGCTTAAACAGCATCTTCAAATGCATCATCCCCAGAAGATCTTTAAACTTCAACGTAATAATTTCTGACTTTTCTCGACATGGGTTTCCAGATTTTGCGTTAATGGCGTTCTCTTTCATGCATTCTAATGGGGTTCCTATTGACACGTATGCCCTCTGCAGCTCTTTGACTTCTTGTTCTCTTGTTCAGAATGGGGTGTATGGAAAACAGATTCACGCATTCGTGGGGAAATCAGGTTGGTTATGTAGTGTTTTTGTGGGGAGTGCGATTGTTGATATGTATGCAAAAAATTCGTTGATTAATGATGCAGTTGAAGTGTTTGATGAAATTCCTATGAAGAATACTGTGTGCGCAAATGCACTGCTGGCTGGGTACGGCGAGGCTAGGATGTGGGTTGAAGGACTTGAATTGCTACGGGAGATGCAGGCTCTGGATTTGAAGTATGACCAGTTCACTCTGTCTGCTTCTTTACGTGCATGCGCTGGTTTATCTGCAATTGCACTGGGTAAGCAAGTGCATGCTTATCTACTGCGAACGGTTTATGATATTACATGTGATGTTCATCTGCAAAGTACATTAATTGAAATGTATGGGAAAAGTGGCATGGTGGAAAAAGCATGGAATGTATTCAATTTCGCAGGACTTAGACAAAAAGAAGATGGGAAAAGGGATATCATAATGTGGACTTCTATGCTTAGTGTTTATGGTAGAAACGGGTGTTACAAAAGAGTAATTGAACTGTACAACCAGATGTTGATGGAAGGGAACAAACCAGATAGAGTGGCTTTTGTGACGGTCATTTCAGCTTGTGGTCATACTGGTGAGGTGAATCTTGGAGTCAAGTATTTTGACTCCATGCAGAGTGATTTTGGGTTGGAACCTGGTCAAGAGCACTACAGTTGTTTGGTTGACTTGCTCTGTAGAGCTGGGGAATTGGAAAAAGCATGGAAGCTCGTAAATGATATCAAAAGTTGGGATTACAATGTTTCCTTGTGGGGAGCTTTACTCCGTGCTTGTTTGGAACAGGGAAATATTAAGTTGGGTAATTTGGCAGCTCATAGGGCACTTGAATTGGATCCTCAGAATGCTGGGATATTTGTTATGCTATCAAATCTGTATGCTGGTTTTGGATTGTGGAATGAGATAGAGCGTTTAAGGGAATTTGTGAGAAAGGAAGGGCTGTATAAAGATGTTGGATGTAGCTGGATAGAGATCACAAGTTGAGAATTACTCAAATAACCTTATGTAATAGTTAAACTGCTCAAGTTGACCTTGATTTACGAGGAAATGGTTTATTGTGAGGTGCTATGATGATTGTTTCATTGAGCCTAAGAGAGTAGCTAGCTTGTATCATAGTTATCCAGCATTACTACCCCATTGTTATGCTAAATGACATAAAGGCAGTTCTGAACTTTAGTGAGCAAAATAAGAGGGTGAAAATAGTTCTCAGATTATCCATGAGGTCTAAGGATTGCCCTCTACTTAGTTCAGTACTGTATACCTCTCCCCACCGCTTACATCATCTCCTTTATCTTTTTTATAACTACCTTACTCGAGGTGTCCTCTTCTCTAATTTACAAAGATCCCTTGCCGGTCATGTTAACTGACAAGTCAAACACATTCCCTCCCTTCTCCCTCCTAAAATTAGAAGATGGTGTGAAAACAACAAAAGATCAGTGCCAACAAAGATTATATCCCAGGCCAGGTACAGAACAAAGTTCTTAGGATGTTTCAGAATACACATGATCATTCACAAACCTTTCTCCAGTACATGACATTTAATGGGGATGGGACCCTACGGGCCCTGCTTTTGGTTTGGACCTGCATGTGCAGTCATGTTCATTGTGACATGATTTTGTATCAATCTCGCCCTTGTTTCTCACATTTGCTTACGAGGTAAAGCGTAATCCTATCCTCAAGTTTTATATTTGTTCCATCAATGTCTAAATGGGTCCAATTGTTCAATTCCCATCCCAATCAATCGTTCTTTCATTATGTATATCCTTCTAATCCAGGTTTCTTATACTCTAGACCCCCATTATCCTTGGTTAATTTTTCAACTAACTCAACTGTATACATATTGTGGTTTGAATATTGAGTTGCCGCAGATCACAACTAAACTCCCAACCAGAAAACTAAGGCGGCGGCCTGCTGCTGGCTACATTTTCAGCACACCTACAAAACCGGTCATCTTTACGACAACATCTCACATGGGGTTTAGCTCTGCTAGCCAGATTGCCAGAGTCGAAATGTTTGTTTCTGTGTTTGGGCATTGCATACCGCAGCTGGCATGCAATATTGTAAGTATAGGTTAAAAATGAGGTTAGAAGTAGCAAAGCAGGGGTGAAGGCAATGAAGGGGAATATGGTTACAGTTATGGTAAAGTAAAAGTGGCAGTTTTGAAGTAGTTGGGGTTGATCTGCCTTACTATGTTGTCTTCTTCATAAGAAGACTTGGGGACAAGAGTAACATGGCCTTCCATGTGCCAAACACAAGGAATGGTCTCAATCAAACTCTCAAAAGAATATCCCTTTTACCCCATTGGACCCTTTTGCCTTTGCCTTTCACTCTCTCTGTGCCTGTGATTTTTTTTTTTTTTTTTTTCTGTTTTTTCCACCATTCAAATCTTTTTCATGTAACATGGAGGAGTCCCTTTTAGGACAGTGACCCAATTTTTCTTTTCATCTCATTTCTATTACCCTTCGGTTATTTTTCTAGTTTAACATGGTATTAGAACAAAATAGTGTAGAAGGTTTATCAGGTTTCTCGAATTTTGGTTTAAGATAATAGTTCGTACATTGGATACCGTGAATGAAATCAATATATGAGCCACCATGTTTAAT 3079 39.98 MSSPHHFYIRRSLDSFASFFRHSCQSKNLKAIKRIHAHLLRTRFQFFSPNLHSKLILSYSQINPNFDAQSLNSIFKCIIPRRSLNFNVIISDFSRHGFPDFALMAFSFMHSNGVPIDTYALCSSLTSCSLVQNGVYGKQIHAFVGKSGWLCSVFVGSAIVDMYAKNSLINDAVEVFDEIPMKNTVCANALLAGYGEARMWVEGLELLREMQALDLKYDQFTLSASLRACAGLSAIALGKQVHAYLLRTVYDITCDVHLQSTLIEMYGKSGMVEKAWNVFNFAGLRQKEDGKRDIIMWTSMLSVYGRNGCYKRVIELYNQMLMEGNKPDRVAFVTVISACGHTGEVNLGVKYFDSMQSDFGLEPGQEHYSCLVDLLCRAGELEKAWKLVNDIKSWDYNVSLWGALLRACLEQGNIKLGNLAAHRALELDPQNAGIFVMLSNLYAGFGLWNEIERLREFVRKEGLYKDVGCSWIEITS 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 47908531 47914931 + XM_039045212.1 Bhi10g01925 48266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g01925 476 TIGRFAM PPR: pentatricopeptide repeat domain 368 396 IPR002885 -
Bhi10g01925 476 TIGRFAM PPR: pentatricopeptide repeat domain 186 218 IPR002885 -
Bhi10g01925 476 TIGRFAM PPR: pentatricopeptide repeat domain 331 363 IPR002885 -
Bhi10g01925 476 TIGRFAM PPR: pentatricopeptide repeat domain 295 328 IPR002885 -
Bhi10g01925 476 TIGRFAM PPR: pentatricopeptide repeat domain 260 280 IPR002885 -
Bhi10g01925 476 Pfam PPR repeat 86 114 IPR002885 -
Bhi10g01925 476 Pfam PPR repeat 260 280 IPR002885 -
Bhi10g01925 476 Pfam PPR repeat 158 181 IPR002885 -
Bhi10g01925 476 Pfam PPR repeat 186 212 IPR002885 -
Bhi10g01925 476 Pfam E motif 413 473 IPR046848 -
Bhi10g01925 476 Pfam PPR repeat family 293 339 IPR002885 -
Bhi10g01925 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 183 217 IPR002885 -
Bhi10g01925 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Bhi10g01925 476 Pfam PPR repeat 360 390 IPR002885 -
Bhi10g01925 476 Gene3D Tetratricopeptide repeat domain 83 258 IPR011990 GO:0005515
Bhi10g01925 476 Gene3D Tetratricopeptide repeat domain 259 473 IPR011990 GO:0005515
Bhi10g01925 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Bhi10g01925 476 PANTHER OS02G0126500 PROTEIN 29 472 - -
Bhi10g01925 476 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 29 472 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g01925 - - - cpep:111777029 840.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g01923 Bhi-Chr10:47908531 Bhi10g01925 Bhi-Chr10:47908531 0 dispersed
Bhi10g01925 Bhi-Chr10:47908531 Bhi08g02165 Bhi-Chr8:61982695 7.89E-07 dispersed
Bhi10g01924 Bhi-Chr10:47908531 Bhi10g01925 Bhi-Chr10:47908531 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g68 . . . . . . . . . . . Cma20g00798 . Car20g00683 . . . . . . . . . . . . . . . . . . . . . Lsi10g00430 . Chy11g00322 . . . . . . . . . . . Cmo20g00806 . . . . Cpe16g00285 . Bhi10g01925 . . . . . . . . . . . . . . Csa02g01323 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009137 1 6 1 1 1 1 1 1 1 1 1 0 1 0 0 1 1 0 1 0 1 1 1 1 1 1 1 2 1 1 31