Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g01940 AAATTCAAAATTATTATTATTAATTTTAATTTTAATTTTATATATAAATTTCAAAAGGGGTTAATTTATCCTTTCAAACTTTGGAATCTGCAACTGCCCTCTGACCCATCTTTCTATTTCTCCCTGCAATTATTTTTTTTCTTCCTATCTCAAACAGAAGAAATGGAATTTCTGGAAGCTAAAGCTTTGAAATCAAGTTTCCATTGGGAATTAGCTATGAAATCTGCTCAACAAGATGCTTTGGTGGAGGAAGTTTGGTGTTTGAACGGAGCTAATCTCGTCGCCGGCGAGGATTTTGTTGAAGTCGACGAGTTTTTGAACTTCTCTAATGGCGATTTAGAACATGGGTCCGCTTTGAGAGTTCAAGAAGATGATGAGTATGAAGAGTTTGAGAAGAATCGGTACTCTGTTTCGTTGAATTCGAACCAGTCCGGTGGGTTTCCGGTCGTCGGAGAGGAGGATTCCAAGTCGTCGCTTCTTGCCGTTGAACTTGCTATTCCGGGCGATTCTCTGGCGGACCTTGAATGGGTTTCTCAATTCGTCGACGATTCTTGCTCTGAATTTTCCTGTGCCGCCGTGGCTTTCAACCGCTCCGAACCGGAAAAGAAACTCGCCGGAACTGTAATTTCGTGTTTGCCGACGTTTTTTCCGGTCAGACCGAGGACGAAAAGGTCAAGACAGTCTCGTCAAGCGAAATCCACAGGTTCTTCTCTCAACCAATCGCCATCGTCGTCGTCCTCGTCGACCTCCTCCGGCGTTTCCTCCGCCGCACCTTGGTTTATCTTCTCCGACGCCGGTGAGAACGTGGACTCTTTGAACGTCTCCAGCGAGCCTCCGAAGAAGCAGAGGAAAAAGTCATCGTCGCCGTCGCCAGCGGCTCTTCAACCAACCGGTCAGATTCCGCGGCGGTGCAGCCATTGTCTGGTTCAGAAGACCCCACAGTGGCGGACGGGTCCAAACGGAGCCAAAACACTCTGCAACGCTTGTGGGGTCCGGTATAAATCCGGTCGGCTCTTCCCCGAGTATAGACCGGCGTTAAGTCCCACTTTTTGCAGCGGCGTTCACTCGAACAGTCATCGGAAAGTACTTGAAATGAGGAAGACGAAGGAGGTTCCAGAACCGGCGACCGAGCTGTCCCAAATGGTCCCAAGTTACTAAAGCAATCGAACCGGGTTCAGATGGACCGGGAAATGGCGAAATGACCAAAAAGGGCAGATTTTTGTTGTGACGCTAAAAGGGAATCCATTTGTACTTGTAGGGTTAGGCGAGGAATTAGACTTAGAGCATTAATTTTAGTGTAGTATTTTTTGTGAAATTAATTTGATTAATTTAGATTTATGTTAATTTAGGTTAGATTAAATATGTTTAGGTAGGAAAAGATGAAGATTTTTGTATTTTTGTATTACTTTAGCTAGTTTACGAATATAAAATACTATTTTTGTTCTCCAAGGAGTTAGTCGTGTTTACTTGTTCTATTTCTTATAAAATTTAGGTTGGAATCTT 1503 43.98 MEFLEAKALKSSFHWELAMKSAQQDALVEEVWCLNGANLVAGEDFVEVDEFLNFSNGDLEHGSALRVQEDDEYEEFEKNRYSVSLNSNQSGGFPVVGEEDSKSSLLAVELAIPGDSLADLEWVSQFVDDSCSEFSCAAVAFNRSEPEKKLAGTVISCLPTFFPVRPRTKRSRQSRQAKSTGSSLNQSPSSSSSSTSSGVSSAAPWFIFSDAGENVDSLNVSSEPPKKQRKKSSSPSPAALQPTGQIPRRCSHCLVQKTPQWRTGPNGAKTLCNACGVRYKSGRLFPEYRPALSPTFCSGVHSNSHRKVLEMRKTKEVPEPATELSQMVPSY 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 48383774 48385475 - XM_039046952.1 Bhi10g01940 48281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g01940 331 Pfam GATA zinc finger 250 283 IPR000679 GO:0006355|GO:0043565
Bhi10g01940 331 PIRSF Txn_fac_GATA_plant 8 329 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bhi10g01940 331 ProSitePatterns GATA-type zinc finger domain. 250 275 IPR000679 GO:0006355|GO:0043565
Bhi10g01940 331 MobiDBLite consensus disorder prediction 217 245 - -
Bhi10g01940 331 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 245 307 - -
Bhi10g01940 331 CDD ZnF_GATA 249 306 IPR000679 GO:0006355|GO:0043565
Bhi10g01940 331 MobiDBLite consensus disorder prediction 166 199 - -
Bhi10g01940 331 MobiDBLite consensus disorder prediction 175 199 - -
Bhi10g01940 331 SMART GATA_3 244 294 IPR000679 GO:0006355|GO:0043565
Bhi10g01940 331 ProSiteProfiles GATA-type zinc finger domain profile. 248 280 IPR000679 GO:0006355|GO:0043565
Bhi10g01940 331 PANTHER GATA TRANSCRIPTION FACTOR 4 331 - -
Bhi10g01940 331 PANTHER GATA TRANSCRIPTION FACTOR 4 331 - -
Bhi10g01940 331 Gene3D - 243 317 IPR013088 GO:0006355|GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bhi03g00894 Bhi10g01940 CCT
Bhi03g00894 Bhi10g01940 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00894 Bhi-Chr3:16827000 Bhi10g01940 Bhi-Chr10:48383774 9.00E-46 dispersed
Bhi10g01940 Bhi-Chr10:48383774 Bhi01g03395 Bhi-Chr1:85724079 1.19E-38 dispersed
Bhi10g01940 Bhi-Chr10:48383774 Bhi10g01941 Bhi-Chr10:48383774 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2239 PF00320 GATA 1.40E-15 CL0167 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g01940 - - csv:101205298 546.584