Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g01956 ATGAAGATCCGTTGTGATGTTTGCGACAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGATGAAGCCGCCCTCTGCGCCGCCTGTGACCGCCACGTCCACCGTGCTAACAAGCTCGCCGGGAAACACAACCGCTTCTCTCTCCTCCAATCCACCGCCGCCGCCGTCGATTCGTTGCCGTTGTGCGATATATGCCAGGTCCGGCGAGCGTTTCTGTTCTGTCGCGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATCTCAATTCACAGCATCAGCGATCACACCCAGAAGCACAGCCGGTTTCTTCTCACTGGCGTGAAGGTCTCGCCGTCGCCGGCGACTTCTACTTCTTCTTCCTCCTCCTCCTCCTCCGTCTCAGGCGGCGGCAAAGAAATTGAAGGTGAAATTGGGTTGTTGAAGAAGTGCTCGAAAAAGAGGGCTAAAATGGAGGAATTACCGCGACAGCCATTGAATGTTGGGAAATTGGAGGTTGAAGAAAATGGGGAATCGTTTACGAGAAGCAGTATTTCAGAGTATTTGGAGAGTTTGCCCGGTTGGTGTGTGGAGGAGTTTCTTGATTCTTCATGTGCTGCTGATATTTTCTGTAAAGTTTGA 615 51.54 MKIRCDVCDKEEASVFCPSDEAALCAACDRHVHRANKLAGKHNRFSLLQSTAAAVDSLPLCDICQVRRAFLFCREDRAILCRECDISIHSISDHTQKHSRFLLTGVKVSPSPATSTSSSSSSSSVSGGGKEIEGEIGLLKKCSKKRAKMEELPRQPLNVGKLEVEENGESFTRSSISEYLESLPGWCVEEFLDSSCAADIFCKV 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 48774845 48775459 - XM_039046544.1 Bhi10g01956 48297

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g01956 204 Pfam B-box zinc finger 59 95 IPR000315 GO:0008270
Bhi10g01956 204 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Bhi10g01956 204 SMART bboxneu5 56 103 IPR000315 GO:0008270
Bhi10g01956 204 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bhi10g01956 204 Gene3D Classic Zinc Finger 1 102 - -
Bhi10g01956 204 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 203 - -
Bhi10g01956 204 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 203 - -
Bhi10g01956 204 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270
Bhi10g01956 204 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bhi10g01956 204 MobiDBLite consensus disorder prediction 110 130 - -
Bhi10g01956 204 CDD Bbox1_BBX-like 5 47 - -
Bhi10g01956 204 MobiDBLite consensus disorder prediction 110 128 - -
Bhi10g01956 204 CDD Bbox1_BBX-like 60 103 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g01956 - - - bhj:120089126 371.703
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g01795 Bhi-Chr5:57052762 Bhi10g01956 Bhi-Chr10:48774845 1.11E-69 dispersed
Bhi05g01796 Bhi-Chr5:57052763 Bhi10g01956 Bhi-Chr10:48774845 4.72E-69 dispersed
Bhi10g01956 Bhi-Chr10:48774845 Bhi12g02501 Bhi-Chr12:78596226 2.58E-34 dispersed
Bhi10g01956 Bhi-Chr10:48774845 Bhi04g00223 Bhi-Chr4:5456637 5.41E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g18 . . Bda06g00954 Bda08g00955 . . . Bma12g00543 . . . Cma20g00817 . Car20g00702 . Cpe04g00107 Cpe15g00559 . . . . . . . Cla02g00492 Cam02g0502 Cec02g0502 Cco02g0508 Clacu02g0505 Cmu02g0501 Cre02g0833 . . Cone3ag1218 Cone10ag1103 Lsi10g00408 Csa07g00027 Chy11g00343 Cme01g01353 Blo04g00532 . . Bda14g00574 Bpe15g00849 Bpe05g00323 . . Sed05g3539 . Cmo20g00825 . Cma19g00687 . . Cpe16g00269 . Bhi10g01956 Tan05g1250 Cmetu11g0516 . Hepe08g0983 . . . . . . . . . . Csa02g01300 . Cme11g00162
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00075 . 6 337 C2C2-CO-like Transcription Factor Family AT5G15850 50.9 6.6e-42 169.1
Bhi04g00075 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 60.9 1.9e-81 300.4
Bhi02g00794 CCT 5 373 C2C2-CO-like Transcription Factor Family AT5G57660 51.8 7.0e-68 255.4
Bhi04g00075 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 9.9e-54 208.4
Bhi10g01287 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 1.8e-90 330.5
Bhi10g01288 CCT 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 1.8e-90 330.5
Bhi10g01289 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 1.8e-90 330.5
Bhi10g01290 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 1.8e-90 330.5
Bhi05g01507 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 1.2e-89 327.8
Bhi05g01508 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 1.2e-89 327.8
Bhi05g01505 CCT 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 1.2e-89 327.8
Bhi05g01506 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 1.2e-89 327.8
Bhi10g01287 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01288 CCT 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01289 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01290 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi05g01507 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01508 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01505 CCT 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01506 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi10g01287 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01288 CCT 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01289 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01290 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi05g01507 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01508 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01505 CCT 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01506 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01795 . 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 54.2 1.6e-50 197.6
Bhi05g01796 . 1 200 C2C2-CO-like Transcription Factor Family AT1G75540 55.4 6.2e-50 195.7
Bhi01g02390 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 1.3e-56 216.9
Bhi03g00888 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.9 4.2e-50 195.3
Bhi03g00887 . 1 110 C2C2-CO-like Transcription Factor Family AT2G21320 70.9 2.2e-43 172.9
Bhi01g02390 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 1.7e-57 219.9
Bhi03g00888 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.9 1.7e-49 193.4
Bhi03g00887 . 1 103 C2C2-CO-like Transcription Factor Family AT4G38960 74.5 9.0e-43 171.0
Bhi05g01795 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 58.6 1.4e-54 210.7
Bhi05g01796 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 58.6 1.4e-54 210.7
Bhi10g01956 . 1 109 C2C2-CO-like Transcription Factor Family AT4G39070 72.5 2.1e-39 160.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2241 PF00643 zf-B_box 5.40E-07 No_clan Bhi TF