Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g01956 ATGAAGATCCGTTGTGATGTTTGCGACAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGATGAAGCCGCCCTCTGCGCCGCCTGTGACCGCCACGTCCACCGTGCTAACAAGCTCGCCGGGAAACACAACCGCTTCTCTCTCCTCCAATCCACCGCCGCCGCCGTCGATTCGTTGCCGTTGTGCGATATATGCCAGGTCCGGCGAGCGTTTCTGTTCTGTCGCGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATCTCAATTCACAGCATCAGCGATCACACCCAGAAGCACAGCCGGTTTCTTCTCACTGGCGTGAAGGTCTCGCCGTCGCCGGCGACTTCTACTTCTTCTTCCTCCTCCTCCTCCTCCGTCTCAGGCGGCGGCAAAGAAATTGAAGGTGAAATTGGGTTGTTGAAGAAGTGCTCGAAAAAGAGGGCTAAAATGGAGGAATTACCGCGACAGCCATTGAATGTTGGGAAATTGGAGGTTGAAGAAAATGGGGAATCGTTTACGAGAAGCAGTATTTCAGAGTATTTGGAGAGTTTGCCCGGTTGGTGTGTGGAGGAGTTTCTTGATTCTTCATGTGCTGCTGATATTTTCTGTAAAGTTTGA 615 51.54 MKIRCDVCDKEEASVFCPSDEAALCAACDRHVHRANKLAGKHNRFSLLQSTAAAVDSLPLCDICQVRRAFLFCREDRAILCRECDISIHSISDHTQKHSRFLLTGVKVSPSPATSTSSSSSSSSVSGGGKEIEGEIGLLKKCSKKRAKMEELPRQPLNVGKLEVEENGESFTRSSISEYLESLPGWCVEEFLDSSCAADIFCKV 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 48774845 48775459 - XM_039046544.1 Bhi10g01956 48297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g01956 204 Pfam B-box zinc finger 59 95 IPR000315 GO:0008270
Bhi10g01956 204 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Bhi10g01956 204 SMART bboxneu5 56 103 IPR000315 GO:0008270
Bhi10g01956 204 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bhi10g01956 204 Gene3D Classic Zinc Finger 1 102 - -
Bhi10g01956 204 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 203 - -
Bhi10g01956 204 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 203 - -
Bhi10g01956 204 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270
Bhi10g01956 204 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bhi10g01956 204 MobiDBLite consensus disorder prediction 110 130 - -
Bhi10g01956 204 CDD Bbox1_BBX-like 5 47 - -
Bhi10g01956 204 MobiDBLite consensus disorder prediction 110 128 - -
Bhi10g01956 204 CDD Bbox1_BBX-like 60 103 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g01795 Bhi-Chr5:57052762 Bhi10g01956 Bhi-Chr10:48774845 1.11E-69 dispersed
Bhi05g01796 Bhi-Chr5:57052763 Bhi10g01956 Bhi-Chr10:48774845 4.72E-69 dispersed
Bhi10g01956 Bhi-Chr10:48774845 Bhi12g02501 Bhi-Chr12:78596226 2.58E-34 dispersed
Bhi10g01956 Bhi-Chr10:48774845 Bhi04g00223 Bhi-Chr4:5456637 5.41E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2241 PF00643 zf-B_box 5.40E-07 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g01956 - - bhj:120089126 371.703