Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g01968 TCGGAAAGATGACGTAATATGGACTGAATCGGCAACGTAGGCGTACTCAAAACCGTCGCTATTTTACACGAATTCGGATTGGTCCACGAAATCAAATCCCCACCTTCGTCAACGCTCGAGCGTGCCCCCCAAAACGCCGCCGTTTTGCTCGCCTCCCTCAGGGCTCAGTCTGAGCAGCAGAGCAGAGCCCTTTGTCCCTTCCATTTCCTTCGTCTCACTCAATACTCTCCTTCTTCTCCTCTCTCTCTCGCAAGAAAGAGCTTCAGCGCGTTGAATGAAAATGTGAGTCAATTTCCCTTTCAATTCGACCCTCAATTGTTGAAATTGGGGTTTTCTAACTCTCTTCTCAGTTTCTTCCCCTGCTCGGATTGATCAAATTTCACACCCTCCCTGTTCTCCCAGTGCCTCGGTGTTTTCTGAACTTGGAAACATACCATGGATGCGACCATTGATTTCTCTCCCAATAGCTACGCTACTCCCAATGGACTGTATTATGGGAGACGTAAGAGACTAAAATTATCTACCAATGGAAAAGATTTTCCTAGCCCTGCCACCTTCTCTGCCCAAAAATGTGACACACCGAGACAAAACAAAATGAAGAACTCGGAAAAAATAATTGATTACTCAGATCCATTTGCCATTAATAATTTGATCGAGGGTCTGGATTGTGGTCAGTTTGGAAGTGTCACTAAAGAGATAGAATCCCTTGTTTCCCATAAGATGCAAGTTTTAAGTCCTTACATTGCCAAGTATCCTACGCTGTCAAGTATGTTATTTGATCTGGGGAGAAATAAAGAGAGTACAGAAGCAATGAACAATCAAGCTTCCCAGTTGGTTCATGATCTCATTGATTTGGAGGATGATTCTGTCACTGATGTTTGTTCCAACAATGTTGAGAAATCACGATTGCCTATCGTAATAATTGATTCTGATGAGGAAGACAGCAAAGATCAGAGAGTTATACATCCTTTTCAAGAGGTTCTGCTGCCTAGACCACTGGGACAAAGTTTGTTCAAGGACATAGCGGTAGTGGATCACCGAGCTCCCTGGGATCACCGAGCTTATGGGGAGGAAGCAACTCCTATTAGTGAACGTGAAACTATAAGTAAGAAAGACAAAGGTGTTTATGTTGGTGTAGAAGAGGATGGGGATGAGGTCAGCGAACAGGCTAACATTGAAGACGATGGCCTTGGAGATATTTGGAACGATATGCAAATGGCATTAGAATGTGCCAAGGACTTGGATGCCACTGTAGATTCATCACCTAACCAGCAAACTGCAGATGCTGTGGACTGTGATCATTCTTTTCTCTTGAAGGATGATCTTGGTTATGTCTGTCGCATTTGTGGGGTTATTGACAGAGGAATTGAGACCATTTTTGAGTTTCAGTACAACAAGGGTAAGAGGAGCACAAGAACATACGTTTCTGAATCTCGCAACAAAGATTCAGGCAATATTGTTGGAGTTCAAATTTCAGAAGACGATTTGACTGTAACTGAAATTTCTGCACACCCTAGGCATATGAAACAAATGAAACCTCATCAAATTGAGGGTTTCAATTTCCTTATAAGCAACTTGGTAAGTGATAATCCAGGAGGCTGCATTTTGGCCCACGCTCCCGGATCTGGGAAAACATTTATGATAATCAGTTTCATGCAGAGTTTTTTAGCTAAGTATCCACAGGCTAGACCATTGGTTGTGCTTCCCAAAGGAATCTTGGCCACATGGAAAAAGGAGTTTCAAATTTGGCAAGTGGAAGATATTCCACTCTATGATTTCTATTCCGTTAAAGCAGATAATAGGGCTCAACAGCTGACAGTACTGAATCAGTGGGTCGAGCACAAAAGTATTCTGTTCTTAGGATACAAACAATTTTCCACAATCGTCTGTGACGTTGAGACCAGTGCTGCATCAACTGCATGTCAAAATATATTGCTCCAGGTTCCTACCATTCTTATCCTAGATGAGGGGCATACACCAAGAAATGAGAACACTGATACTTTGCAAACTCTTGCCAAAGTCAGAACTCCACGAAAAGTGGTTCTTTCAGGAACCCTATATCAAAATCATGTTAAAGAGGTATTCAATATAGTGAATCTTGTTAGACCGAAGTTCATGAGATCAGAAACTTCTCGACCTATTATCAAACGCATCATGTCGAGAGTAGATATACCTGGTGTAAGGAAGCAGTTCAAAGCAGGTGTGGATGCTGCCTTTTATGATCTGGTGGAACATACGCTTCAGAAAGATACAGATTTTAGGAGGAAAGTGAGTGTCATCCATGATTTACGTGAGATGACAAGCAAGATTCTGCATTATTATAAAGGAGATTTTCTTGATGAGCTCCCTGGACTGGTTGACTTCACTGTGGTGCTAAATCTCACTTCTAAGCAGAAGCATGAAGGTGAAAAAGTAAAAAAGTTTAACAGGAAGTTCAAAATAAGCTCTGCTGGTAGTGCTGTTTATTTGCATCCAAAGTTGAATGTTTTCTCTGTTAATGCTGCTGTAACGGATGATAAAATAGATGAGGTCATTGATAAAATGGATGTTAGAGATGGAGTGAAGACAAAATTCTTTCTTAATATGCTGAATTTGTGCGCTACTACTGGGGAGAAGCTGCTGGTTTTCAGCCAATACCTTCTTCCTTTGAAATTCATGGAGAGATTGGTTGTTCAGAAGAAGGGTTGGAGTCCAGGAAGAGAAACCTTTATGATATCTGGTGAAACAACTCCTGAGCAACGGGAATGGTCGATGGAACGTTTCAACACCTCACCCGATGCCCGAGTCTTCTTTGGCTCCATTAAGGCTTGTGGAGAGGGTATATCTTTGGTAGGGGCATCACGTATCATCATCTTGGATGTTCATCTCAATCCATCAGTGACTCGCCAGGCAATTGGCCGTGCATTCCGTCCTGGTCAAACAAAGAAAGTCTTTGCATATAGATTGGTGGCTGCTGATTCACCTGAAGAGGGAGATCACAGTACTTGTTTCAAGAAGGAACTGATTGCAAAGATGTGGTTTGAGTGGAACGAGTATTGCGGCTATCATGACTTTGAAGTGGAGACTGTCGACGTGAAACAGTGTGGAGATAATTTTCTAGAAACCCCACTTCTAGGACAAGATGTCAAAGTTCTGTACAGAAGGTAGAAGACCCTGCAATATAATTGTACAGATGAGGCAGAGGGAATTATTATCTATCTTTGTCTCATCAAAACTCTTCATAAGATCATTTTGCTCCTATAACCTGTTCATGGATTTTTTTTCTTTCTTTTTTGTAAAGAGCATAGGCAGATAGCCAAATGGTGTTAGTTGACTTTCTTTCTTGACTTGTATAGTGACTACTGCCTTTTGCCTGGATATTGTTCACAGTAAATGGAGTTTGTGACACTCAGCTAACTCCTACAGACCACTGATCAAAGTTTTTTGGTAACAAAGTTTTGGTACAGTTAATTTTGAGTACAA 3462 41.62 MDATIDFSPNSYATPNGLYYGRRKRLKLSTNGKDFPSPATFSAQKCDTPRQNKMKNSEKIIDYSDPFAINNLIEGLDCGQFGSVTKEIESLVSHKMQVLSPYIAKYPTLSSMLFDLGRNKESTEAMNNQASQLVHDLIDLEDDSVTDVCSNNVEKSRLPIVIIDSDEEDSKDQRVIHPFQEVLLPRPLGQSLFKDIAVVDHRAPWDHRAYGEEATPISERETISKKDKGVYVGVEEDGDEVSEQANIEDDGLGDIWNDMQMALECAKDLDATVDSSPNQQTADAVDCDHSFLLKDDLGYVCRICGVIDRGIETIFEFQYNKGKRSTRTYVSESRNKDSGNIVGVQISEDDLTVTEISAHPRHMKQMKPHQIEGFNFLISNLVSDNPGGCILAHAPGSGKTFMIISFMQSFLAKYPQARPLVVLPKGILATWKKEFQIWQVEDIPLYDFYSVKADNRAQQLTVLNQWVEHKSILFLGYKQFSTIVCDVETSAASTACQNILLQVPTILILDEGHTPRNENTDTLQTLAKVRTPRKVVLSGTLYQNHVKEVFNIVNLVRPKFMRSETSRPIIKRIMSRVDIPGVRKQFKAGVDAAFYDLVEHTLQKDTDFRRKVSVIHDLREMTSKILHYYKGDFLDELPGLVDFTVVLNLTSKQKHEGEKVKKFNRKFKISSAGSAVYLHPKLNVFSVNAAVTDDKIDEVIDKMDVRDGVKTKFFLNMLNLCATTGEKLLVFSQYLLPLKFMERLVVQKKGWSPGRETFMISGETTPEQREWSMERFNTSPDARVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVFAYRLVAADSPEEGDHSTCFKKELIAKMWFEWNEYCGYHDFEVETVDVKQCGDNFLETPLLGQDVKVLYRR 903
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 48981958 48989973 - XM_039045806.1 Bhi10g01968 48309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g01968 903 CDD SF2_C_SNF 694 838 - -
Bhi10g01968 903 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 565 IPR027417 -
Bhi10g01968 903 Gene3D - 638 876 IPR027417 -
Bhi10g01968 903 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 865 IPR027417 -
Bhi10g01968 903 Gene3D - 334 579 IPR038718 -
Bhi10g01968 903 Pfam SNF2-related domain 386 593 IPR000330 GO:0005524|GO:0140658
Bhi10g01968 903 Pfam Helicase conserved C-terminal domain 716 826 IPR001650 -
Bhi10g01968 903 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 380 559 IPR014001 -
Bhi10g01968 903 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 18 903 IPR044567 GO:0080188
Bhi10g01968 903 SMART helicmild6 739 827 IPR001650 -
Bhi10g01968 903 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 716 881 IPR001650 -
Bhi10g01968 903 SMART ultradead3 362 570 IPR014001 -
Bhi10g01968 903 PANTHER PROTEIN CHROMATIN REMODELING 35 18 903 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g01968 K10875 RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] - csv:101207775 1660.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g01967 Bhi-Chr10:48981958 Bhi10g01968 Bhi-Chr10:48981958 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g335 . Blo15g00756 Bda06g01081 . . . . . . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 . . . . . . . . . . . . . . . . . . . . . Lsi10g00400 . Chy11g00351 . . . . . . . . . . Cmo02g00382 Cmo20g00835 . . . . Cpe16g00264 Cpe05g01280 Bhi10g01968 . . . Hepe08g0991 . . . . . . . . . . Csa02g01291 . Cme11g00153
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004368 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 2 4 1 3 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2245 PF00176 SNF2_N 1.60E-19 CL0023 Bhi TR