Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g02000 ATTTTGAAAAATCTTCCAATATATTGGAATGGCTCCTACAGATATGACAAGTGCAAGGCTGATAAGAGTGGATCAATCAGGAAATGGAGATTTTAAAAAGATTCAAGAAGCAATTGATTCTGTTCCATCTCATAACAATGAACTCGTTTTCATTTGGGTTAAGCCTGGAACTTACAGAGAGAAAATAGTGGTACCGGAGGAGAAGCCATTCATAACAATAAGCGGCAGCAAGGCCTCCGACACCATAATCACATGGAACCAAGGAACTGATTTACTTCAATCTCCGGTCGTCTCCGTCTTTGCCTCCGACTTCATCGGCCGTTTTCTGACCATCCAAAACACCTTCGGCACCACCGGCATTGCGGTGGCGCTAAGGGTCTCTGCAGACAGAGCCGCCTTCTATGGCTGCCGGATCATATCCTTTCAAGATACCCTTCTGGATGACGCCGGAAGACATTACTTCAAGAATTGTTACATTGAAGGAGCCACCGATTTCATCTGCGGAAATGCCGCTTCTCTCTACGAGAGGTGTCATTTGCACTCGACGTCGGATAGAGGTGGGGCGATGACGGCGCAACACCGGAACACGACGGAGGAGAACACTGGGTTTGTGTTCTTGGGAGGAAAAATTACAGGAAGTGGTTCCACTTTTCTTGGACGGCCATGGGGGGATTGCTCTAAGGTTGTGTTTGGTTACACCTACATGTCCAATGTTGTTGAACCACAGGGCTGGAATGATTGGGGAGATCAAAGCAAGCAAAGAACAGTGTTGTATGGAGAATACAAATGCTATGGGCCAGGAGCAAATAGAGCCAAAAGAGTGGCATGGTCACGAAGCCTGTCGACGGATGAAGCTGCAAAACTCTTCACCAAAGACATCATTGGCGGTCGAGCTTGGCTTCGACCTGCACCATCTCATTTCAAAAGGGGCTAGTCCTACCTAGCTCCATCATTATTATTGTCACAATCAACATTCTCTATTAATTTTCTCACATATAATTATAATCTCAATATTACGTATGGATAATATGATGTTTCTTCTTGTTAGTCCGACATTATAATTTTGTTGTCCATGAGTTGGTATCGCAAGACGACACAAAATGATATAACA 1111 44.64 MAPTDMTSARLIRVDQSGNGDFKKIQEAIDSVPSHNNELVFIWVKPGTYREKIVVPEEKPFITISGSKASDTIITWNQGTDLLQSPVVSVFASDFIGRFLTIQNTFGTTGIAVALRVSADRAAFYGCRIISFQDTLLDDAGRHYFKNCYIEGATDFICGNAASLYERCHLHSTSDRGGAMTAQHRNTTEENTGFVFLGGKITGSGSTFLGRPWGDCSKVVFGYTYMSNVVEPQGWNDWGDQSKQRTVLYGEYKCYGPGANRAKRVAWSRSLSTDEAAKLFTKDIIGGRAWLRPAPSHFKRG 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 50011460 50016780 - XM_039046694.1 Bhi10g02000 48341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g02000 301 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 6 293 - -
Bhi10g02000 301 PANTHER PECTINESTERASE 11-RELATED 6 293 - -
Bhi10g02000 301 Pfam Pectinesterase 14 282 IPR000070 GO:0030599|GO:0042545
Bhi10g02000 301 Gene3D - 6 301 IPR012334 -
Bhi10g02000 301 SUPERFAMILY Pectin lyase-like 7 298 IPR011050 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g02000 K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] - csv:101215864 571.237
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00183 Bhi-Chr4:4451096 Bhi10g02000 Bhi-Chr10:50011460 1.24E-138 dispersed
Bhi06g00372 Bhi-Chr6:8075247 Bhi10g02000 Bhi-Chr10:50011460 1.50E-81 dispersed
Bhi10g02000 Bhi-Chr10:50011460 Bhi11g02033 Bhi-Chr11:57665942 1.91E-79 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g375 . . . . . . . . . . Cma02g00394 . Car02g00256 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00375 . Chy11g00374 . . . . . . . . . Sed05g3617 . . . . . . . Cpe05g01263 Bhi10g02000 Tan05g1298 Cmetu11g1012 . Hepe08g1012 . . . . . . . . . . Csa02g01264 . Cme11g00120
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003216 0 2 0 0 0 2 2 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 3 1 2 3 2 2 51