Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g02008 TCCCCTTAATTTATTTCTTCTTTCTCACATTATTTATATATCTCTTCTCTTCTTTTTACTTTCATTCAACAACAACAAAAACCACAACGTTACTAAACACAATATTAACTCTTTTGGGCTGCCGGCCGGAGACATGTTCAAGTCGGAGATGACGGTGTCGGCTCGACTCAAACGGCGGCGACACCGCGGAAATTGCCAGAGCTTGTCTTCCGTCTCAGTTCCGGCAAGTCGGGTCGACCATTTCGAGGATCTAGTTAGACCCGGAGGTTTGTCCGAGTTGGCTAAGTACGAGATCTCCTCTACGGAATTTCGAATTAATATGATGTGTTCGCCCCTAGTAGAGGTGATGGCGAACTCCATGGTCGAGGGAGAGATTTCGAGAAAGAGAAAAGGCAAGAACAAGGAAACAAAATCGAAAGTGAGAAATGATAATAATAATAATAATGTTGACAGGGAGGATGGGAAAAGAACAGAGAAGAAAATGAAAGAGAAAGTTGAAGAAGATGAAGATGAATCAAAGATTACAGAGGAAACAGAGAGATGGAAAAAACATAATTCAAAAGCTTTAGAAGAAGTTCAAAAATCAGAATATGTTCATGTCAGAGCACGTCGAGGCCAAGCCACAGACAGCCATAGTCTTGCAGAAAGAGCAAGGAGAGAAAAGATAAGTGAAAGAATGAAGTATTTGCAGAATTTGGTCCCTGGGTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATTAATTATGTTCAATCTCTTCAGCAACAAGTTGAGTTCTTATCAAGGAAGGTGGCTGCTCTAAATCATAGAGTTGATTTTATCAATGTAGATGACCTCTTGGCCAAACAGGAAAATTTACAGGTGTTTCCAACGATAACAGCTGATTGTTCATCCTACTTTAATCAACTTGGAATGGGCTCAAGCTCTCTAACAGTCCCACAAACTCCATTGATCAATAACAACCTATCTTCAATTACTCATTTTGAACTTTCTTCAACTTGGGGAGGTGATTTACAGAGGTTTGAAGAATTAGGAGGGCCGCCATTGTTGTCGCCATCAAGCTTTTTATCGCAACAATGTTCAGGCATTGAAGATGAAAATGAAACATTATTTATGGACCACAAAGTTGTTCCATTTTAACGTTTAATTATTATTGCAGATATTCAAAATAAAAAAAAAAAATAATAATAAATAATGTCTTATGATGGAAATTCACTAAATTGTAGGTTGGTGTTACTATTGAATATATTCAATTTCATATGGATTTGGTATTTTTCAATA 1291 37.49 MFKSEMTVSARLKRRRHRGNCQSLSSVSVPASRVDHFEDLVRPGGLSELAKYEISSTEFRINMMCSPLVEVMANSMVEGEISRKRKGKNKETKSKVRNDNNNNNVDREDGKRTEKKMKEKVEEDEDESKITEETERWKKHNSKALEEVQKSEYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSRKVAALNHRVDFINVDDLLAKQENLQVFPTITADCSSYFNQLGMGSSSLTVPQTPLINNNLSSITHFELSSTWGGDLQRFEELGGPPLLSPSSFLSQQCSGIEDENETLFMDHKVVPF 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 50176855 50181531 - XM_039046032.1 Bhi10g02008 48349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g02008 338 MobiDBLite consensus disorder prediction 1 24 - -
Bhi10g02008 338 Coils Coil 107 134 - -
Bhi10g02008 338 Pfam Helix-loop-helix DNA-binding domain 166 213 IPR011598 GO:0046983
Bhi10g02008 338 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 6 331 IPR024097 GO:0006355
Bhi10g02008 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 232 IPR036638 GO:0046983
Bhi10g02008 338 CDD bHLH_AtBPE_like 152 238 - -
Bhi10g02008 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983
Bhi10g02008 338 SMART finulus 168 218 IPR011598 GO:0046983
Bhi10g02008 338 Gene3D - 159 234 IPR036638 GO:0046983
Bhi10g02008 338 MobiDBLite consensus disorder prediction 80 135 - -
Bhi10g02008 338 PANTHER TRANSCRIPTION FACTOR BHLH74 6 331 - -
Bhi10g02008 338 Coils Coil 202 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g02008 - - - csv:101216346 431.024
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g02008 Bhi-Chr10:50176855 Bhi09g01292 Bhi-Chr9:31785094 7.31E-44 dispersed
Bhi10g02007 Bhi-Chr10:50176855 Bhi10g02008 Bhi-Chr10:50176855 0 tandem
Bhi10g02008 Bhi-Chr10:50176855 Bhi10g02009 Bhi-Chr10:50176855 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g985 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g3618 . . . Cma20g00847 . . . . Bhi10g02008 Tan05g1303 . . Hepe08g1014 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012104 0 3 0 0 0 1 1 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2248 PF00010 HLH 2.70E-06 No_clan Bhi TF