Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g02041 GTATGGAAGTGTTTTTTTGAAGGGTTAAAATCACTTTTATCATTTCAAATCATCTGAAAATACTTTTAAATCATTCAACATCGATGTTAATAGCATGAAAAATACATTTAAAAGTGAAAGTAAATATTGAATCGATTTTGAGTGATTATAAATGGTTTTATATATGAGAAAAGCTATTTTAATTATTTCAAAATTACTCTCAAATAGGATATCGTGGCTTTAGTCATTTGGTACAAACTTGAAAATTTAGAGATTAAATTATAATTTAACTTAGATGGTATGACTTTATGATCGAATGGCTTGTTGTTTCAAATAGATTACGCGTGATCATATAAGTGGTGCTCTAATATCCCTAGAGACTATGTGTATGTGTAATGGTGAGGTTAACTCTAGGGATCATTTATTCACTACCTTTTTAGCAAGGTTATTTGGGGAGACGCACATTTATGAGAAAGATGCTCTCATTGGGGTATGAAACTCAGTTGGGTTCGTTACTTTAGTGTCAGTAATCACGAGGAGTAAGGTCTGAAAAGTCTCTTGATATGATTTTTTTGTGAGTTTTTGTCACTGTTTTTTTCCTTTCTTTTTTTGTAGTGATTTATTTGTGTCTTATCTTAGAGTGCAAGGTTGGATTCTCTTTCTAACCCTCCAATTGGTTCAAGAAAAAAATGTTTATAAATGAATTATTTAAAAAAAATTAAAAAATTTGATACTTTCAAAGAATGGATCTTCTTTCACAAAGATCCCCAAAAAACATTGCCAATCTCTGTGGGACTCTTTGCACCTTCTTGTGGAGTTCAATGTCCGTTCCGTTGCTTAGACGAACCCTCTGGCCGATCCGAAACTCCACCTTTAACCTCCCATTTTCACATTCCTTCTTCTCATCCTCACCGCCCGGCGAACCTTCGCCGTCGACGAAACCCTCAATCTCCACCGTTGTTTCAGTTCTCACTCACCACCGCTCAAAATCCCGCTGGCGATTCCTGAACTCCCTCTGTCCCGACGGCTTCGATCCTGGCGAGTTTTCCGATATCCTTCTCCAAATCAAGAACAATCCTCATCTTGCCCTCCGCTTCTTCCACTGGACTCAGAACAAATCCCTCTGCAATCACAATCTCGTTTCTTACTCAACCGTCATCCACATCCTTGCCCGCGGCAGACTCAGAACTCACGCCAAGGATGTTATTCAGACAGCCATTAGGGCTGCGGAGCTCGAAGATGGGGATGATTGTTCCAAATGTGAGCGGTTTTCGTCTTCGAGGCCCTTGAAGCTGTTTGAAACCCTCGTCAAGACGTATAAACGGTGTGGCTCTGCCCCCTTTGTGTTTGATTTATTGATTAAAGCTCTTTTGGATTCTAAAAAGCTCGAGTCAGCCATTCAAATTGTTAGAATGTTACGGTCTCGTGGGATTAGCCCACAAGTTGGTACGTTGAATTCGTTGATTTTGTTGGTGTCAAAATTCCAGGGAGCTAATGCAGGTTATGCAATTTTTAAAGAGGTTTTTGGTTTAGATTGTGAAATTGAGGAAGAAAATGTGAAATTGAAGGCTGGAGTTAGTCCTAATGTTCATACTTTTAATACATTAATGGAGTGTTTTTATCAAGATGGGTTAGTAGGGAGGGTGAAGGACATATGGGATCAATTAGCTGATTCAAATTCAATTCCAAACAGCTACAGTTATAGTATTCTGATGGCAGTTTTCTGTGAAGAGAAAAGAATGGGAGAAGCAGAGGAGTTGTGGGTAGAAATGAAAATAAAGAAGTTGGAGCTTGATGCTGTAGCTTACAATACTATAATTGGAGGATTTTGTAAAGCAGGAAATGTTCATAGAGCTGAAGAGTTTTATAGAGAAATGGAACTCAGTGGAATAGAGAGTACTTTCTCCACCTTTGAACATCTCATCAATGGCTATTGTGAGACTGGAGATGTTGATTCTGCATTACTTGTGTATAAGGATATGCGCAGGAAACGTTTTACTCCTAACGCGTTGATACTGGAAGAACTTATTAGAGGGTTGTGTGCTGAGACAAGGCTTTTAGAAGCTTTAGATGTTTTTTGTTTTGCTATAGAAGACTCTAACTTTTGTCCCACACTGGAAACTTATGAACTTCTGATAAATGGGTTGTGTCAGGAAGGGAAAATTGAAGTTGCATTTAAGCTTCAAGCACAGATGGTAGGGAAAGGTTTTAAGCCAAATTTGAAGATTTACCAATCGTTTATCGATGCATACATAAAAGAAGGAAATGAAGAAATGGTTGAGAAGTTAGGGAAGGAAATACTTGAAATCCAGCTGAGTTGAGAAGGGAGTTGCATCACATTGTATCTTGTTGTCTGCAGTACTAATGCAGCAGATCTGAAAGAAGTTTCAACAGACAGGAGAGGGTTGGCCAGACTTTGTGAAGCTAGAGATTACAGTAAAAGACCCACCACCCAGGTTGACACCAGAGGAGTTAGCTGAAAGATGAAAGAAAGTTCTATGTTTCAAATGTGATGGACATATTTGGACCAAGACAGTGTGAGAAATTATTCAGTATGAAGCATGCTTGGAGGAGGAAGATAGAGATATTGTTATGGACATAGAATATTCTGAAATCAAAGCCCTCGAGGACAAGGGTGTCTTTTAAGTGGGGAGAAATCAGAAATGTTAAGATCCTGAATTTTTATTTTTGTTTACTTTTATCTAGATTTTATTGAGTATTTTTTTCCCTTTAGTTTTTTGTAATTCAATTAATTGGTTAGTGAGTGGATTCCTTTAAGGAAGGAATTCAAATAGCGGCTTAATTTTAGGAGAATTTATGGGAGTGGTTTGTTTTAGATTTTTTAAGTTAAATAGGAAAAATTGAGTGAAGGGGAGAATTGTGTACATTGAAGGAGGTAGTATGGAAAATGATTTATTAA 2899 37.5 MDLLSQRSPKNIANLCGTLCTFLWSSMSVPLLRRTLWPIRNSTFNLPFSHSFFSSSPPGEPSPSTKPSISTVVSVLTHHRSKSRWRFLNSLCPDGFDPGEFSDILLQIKNNPHLALRFFHWTQNKSLCNHNLVSYSTVIHILARGRLRTHAKDVIQTAIRAAELEDGDDCSKCERFSSSRPLKLFETLVKTYKRCGSAPFVFDLLIKALLDSKKLESAIQIVRMLRSRGISPQVGTLNSLILLVSKFQGANAGYAIFKEVFGLDCEIEEENVKLKAGVSPNVHTFNTLMECFYQDGLVGRVKDIWDQLADSNSIPNSYSYSILMAVFCEEKRMGEAEELWVEMKIKKLELDAVAYNTIIGGFCKAGNVHRAEEFYREMELSGIESTFSTFEHLINGYCETGDVDSALLVYKDMRRKRFTPNALILEELIRGLCAETRLLEALDVFCFAIEDSNFCPTLETYELLINGLCQEGKIEVAFKLQAQMVGKGFKPNLKIYQSFIDAYIKEGNEEMVEKLGKEILEIQLS 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 51060553 51064893 - XM_039045693.1 Bhi10g02041 48382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g02041 525 Gene3D Tetratricopeptide repeat domain 103 265 IPR011990 GO:0005515
Bhi10g02041 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Bhi10g02041 525 Gene3D Tetratricopeptide repeat domain 434 525 IPR011990 GO:0005515
Bhi10g02041 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Bhi10g02041 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Bhi10g02041 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Bhi10g02041 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Bhi10g02041 525 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 33 523 - -
Bhi10g02041 525 Pfam PPR repeat family 280 328 IPR002885 -
Bhi10g02041 525 Pfam PPR repeat family 459 504 IPR002885 -
Bhi10g02041 525 Pfam PPR repeat family 351 398 IPR002885 -
Bhi10g02041 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Bhi10g02041 525 Gene3D Tetratricopeptide repeat domain 270 416 IPR011990 GO:0005515
Bhi10g02041 525 TIGRFAM PPR: pentatricopeptide repeat domain 353 384 IPR002885 -
Bhi10g02041 525 TIGRFAM PPR: pentatricopeptide repeat domain 318 351 IPR002885 -
Bhi10g02041 525 TIGRFAM PPR: pentatricopeptide repeat domain 389 422 IPR002885 -
Bhi10g02041 525 TIGRFAM PPR: pentatricopeptide repeat domain 460 492 IPR002885 -
Bhi10g02041 525 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 33 523 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g02041 - - - bhj:120088417 1030.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g02041 Bhi-Chr10:51060553 Bhi05g01136 Bhi-Chr5:40798898 1.93E-15 dispersed
Bhi10g02041 Bhi-Chr10:51060553 Bhi05g01167 Bhi-Chr5:41685516 2.69E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g536 Blo02g00788 . . Bda08g00906 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1132 Cone10ag1142 Lsi10g00648 . . . . . . . . . . . . . . . . . . . . Bhi10g02041 . . . . . . . . . . . . . . . . Cme11g00226
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012888 2 1 1 1 0 0 1 1 0 1 1 0 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 27