Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g02053 AGAGATTCCTTTTAACTCATCATTATTAAAGAAAAGAGAGAGGGGGGAAGCTGAAAATGACAGCAAGCGTACTAGCAATGGACCAAGCTTGGAGGGAGACTAAAGAAATCAGAGCTTGACGAAAATGGGAATTCGAGTCTTCAATCTTCTAATTAAAATCTCCCTTAAACTATGCGATTCAAGCTGTCCACGAGCTTCATCGAATTGAACAAAACCAACAACAACAGCAACAGGGTTTACTCCTACTTCTACTTCTACTTCTACTTCCCCCCTTTGACTGTTAGCTCCTTCAAATTTCTTTCTCAAAATCCTCTCTAATTTCCCCTTTTCTTTAGTACCCACTTTGGAAAAAGACACTGGTTTCTGCTCTTCTTCTTCATTTCTGCATTTTCAGTCACCCACACGCTCCACCAGCTTCTTCCGAGCTTTGAAAATGGCTGCCACTGTCCTCTTTCTTTCTGTCTCCTCTATTTTCCTTCTCTGATGGCTGTTTTACCCTTTACAAAAAGGTTTGTTGCAGTTCCCCCACGAATGGGTTTCGATTGTTTCTTCCTTTTATCAAAACGGCTGAGCCTAACTGCCAATTGATTCCGGTTTCACCCTCAACTATGAAAGCTGGATCAGAGAATGGATGGCACTGCATCAAGTCTCTTTACTTTAGAGGTAAACCAGCCAAGGATTTGTGCTTGTTGCAGAAGGTGAAGGCCTCCACCTGTACTCCTGGAGAAGCCCCAGTTTATCTCAACGTGTATGACTTGACCCCGGCAAATGGCTACGTCTACTGGGCTGGCCTTGGTATCTTCCACTCTGGTATAGAAGTTTACGGCATTGAATATGCCTTTGGAGCCCACGACTACCCGACGAGTGGTATCTTCGAGGTCGAACCCCGAACATGCCCTGGCTTCAAGTTTAGGAAGTCAATCTATATTGGTACAACTTGCTTGGATCCAATCCAAGTAAGAGACTTCATGGAGCGTCAAGCTGCGAACTATCATGGCGATTCATATCACTTGATCGTGAAGAATTGCAACCACTTCTGTGAGGATGTATGTAGAAAGCTAACCGGGAAATGCATACCGAAATGGATTAATCGGCTTGCAAGAATAGGTTCAAAATGCAACTGCATACTCCCCAAGGCACTTAAGGCCACGACCGTGCAACACGACCCGAGATATGAGGGACAGGACAGCGAAAAGAAAAGGCTAAGGAGTGGCTTCAGTTGCTTATCCTCCATCTCCATGAATCAGAAGGAAGTTTCAATATCTTCACTGTTTCTACACTCCCACTATAAAGGCTGCCTACCTCCATGGGAACTAAAAAGATCAAAAAGTTGGTCCTTCAAGTAAGGAGAAGACAGACAACCTACCTACCCGGATTTGAGATAGCTAACAAGTTTCCTTCTTCCAGTTCTTGGGATAATAGCCATGGGAGCTGACTGGTTTGAGCTTTGAGGATTGATAACAGAGGCTCTAATCTCTCTCCTTTTTCTCTATTCTCTTGTGTTTTTTAGTCTCTGAGAGGCTTTGTTCTGATCATTGACTTGGGGGATAATTCATTCATGATGTCGAGTTATATCTTTTGGTAGAGCTTAGGAATCCAAGTAGCTGGTTGGTTTGCCAATGCCAATGCCAATGTATATTAGCTGTTCATCTTCTTCTCTTTGCTAATCATTGTTTTGGCAGTAGCTAAGAATTCTCCATGGCTCCTCTCTTTTTA 1716 43.36 MKAGSENGWHCIKSLYFRGKPAKDLCLLQKVKASTCTPGEAPVYLNVYDLTPANGYVYWAGLGIFHSGIEVYGIEYAFGAHDYPTSGIFEVEPRTCPGFKFRKSIYIGTTCLDPIQVRDFMERQAANYHGDSYHLIVKNCNHFCEDVCRKLTGKCIPKWINRLARIGSKCNCILPKALKATTVQHDPRYEGQDSEKKRLRSGFSCLSSISMNQKEVSISSLFLHSHYKGCLPPWELKRSKSWSFK 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 51357301 51360867 + XM_039045261.1 Bhi10g02053 48394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g02053 245 Pfam PPPDE putative peptidase domain 42 177 IPR008580 GO:0008233
Bhi10g02053 245 Gene3D PPPDE domains 37 193 IPR042266 -
Bhi10g02053 245 SMART DUF862_2a 41 179 IPR008580 GO:0008233
Bhi10g02053 245 PANTHER DESUMOYLATING ISOPEPTIDASE 3 244 IPR008580 GO:0008233
Bhi10g02053 245 ProSiteProfiles PPPDE domain profile. 41 178 IPR008580 GO:0008233
Bhi10g02053 245 PANTHER DESI-LIKE PROTEIN 3 244 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g02053 - - - csv:101211519 513.457
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00266 Bhi-Chr4:6439422 Bhi10g02053 Bhi-Chr10:51357301 1.97E-115 dispersed
Bhi05g01196 Bhi-Chr5:42389883 Bhi10g02053 Bhi-Chr10:51357301 4.30E-132 dispersed
Bhi05g01197 Bhi-Chr5:42389883 Bhi10g02053 Bhi-Chr10:51357301 4.30E-132 dispersed
Bhi10g02053 Bhi-Chr10:51357301 Bhi12g00529 Bhi-Chr12:16964689 1.48E-74 dispersed
Bhi10g02053 Bhi-Chr10:51357301 Bhi10g02054 Bhi-Chr10:51357304 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g877 . . . . . Bpe13g00456 . Bma15g01028 . . . Cma07g00510 . Car07g00446 . . . . . . . . . . . . . . . . . . . . Cone3ag0624 . . . . . . . . . . . . . . Cmo07g00508 . . . Car05g00768 . . Bhi10g02053 Tan05g1355 . . Hepe10g1418 . . . . . . . . . . Csa04g00525 . Cme02g00859
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000619 5 5 3 1 3 3 4 3 3 3 3 2 4 3 3 2 2 6 4 2 3 3 3 3 3 3 3 11 5 2 103