Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g02075 ATGATTTCTCCACCAAAACCATGACCATTGAAATATTCTTAAACCAATGAAACCAATTGGTTTTCAATATTCATTTTCATAAAAAATGGGTTTTCTGTAAACAAATCGTACACCACATTTTTTGAGTAAGAAGAAGACGCCATTAGAAAGCAAGAGAAAAACAGAGCAGAACAAAGCAGAGAGAAGAGGAAAATTCGAAGGCAAAATGGGAAGGAAAGGCCACTTGGTTAAAATTCCCACCTCGAAATCTCCGGTCAAACTCGAAACCAACGGTCCTTTATCACAAAATCCTAGCGTCCTTTCAATGGATCCACAGATGCATATATTTGGGCGTGAAATGTGGCTTGATTTCCAGAGTTCAGTTACTAAACTTCAGGGCAAATCATACACACAGAGAGAGAAAAAAGAGAGAGAAAGACTGAGAGATTTCAATAACCCACCTGCGTCTCAAACCCTACTTCCATTAATCACAGGAGAAAAAAGGGATTAAAGAATGGCGCAACCGAATTCGGAAGACAAAGTGAGTGAAAACCCTGAAATGGAGGTCAAAAAAGAAATTATCTATGGCGATGGCGATGGAAGTAGCAACAGTAACATTGCTAATTTGGCCTTCAGATTCAATGCTCAAGCGCCCGAGTTTTTCCCTAGAACGCAAACCACCCAGATGCCTGTTACCGGCTATTTTCACCCTTATTTCCATTTTCTTGGTGGGGGTCCTGCTTCTTCAGATTGGTTCTTTATTGGGGATCAAGAACCTGCTTATTTGATCCCTAATCCCAACATTCAGCTGCCTAATTTCTCTAAGCATGCCCGTTCTGAAGAAATTCAGCAAAAAATCATCAAACAGGTAGAATATCAGCTCAGTGACATGAGTCTTCTTGCAAATGAGACTCTTTCAAAGCACATTAGTAAAGATCCTGATGGTTATGTTGCGATTTCTATTCTTTCGGCGACGAAAAAAGTGAAGTCCCTCTCAACCAACAACAGTTTCATAGTTCAAGCTCTCCGCTCCTCTTCAAGGCTTGTTGTCAGTGCTGATGGTAAGAAAGTTAGGCGTAAGGTTCCATTCACAGACAAGGACAGAGAGGAATTGCTGTCCCGCTCAGTTGTTGCTGAGAATTTGCCTGAAAATCACTCTCATCACAACCTGGAGAAAATATTTAGTGTGGTCGGAAGTGTGAAGACTATCCGAATCTGCCATCCCCCGGATTCAAATCCCTGCTGCTCTAAAGGTGAATTGCTCATCAGTAATAAGCTTCATGCACTTGTGGAATACGAGTCGCCAGAGTTGGCTGAAAGAGCGGTTGAGAAGTTAAATGATGAGAGAAACTGGAGGAAAGGACTCCGAGTTAGGTTAATGCTCAGACGCTCGCCGAAGTCTGTTCTCAAGACTCGAAAATCAGAATTTGATAGCATTTTGGATGATGATGATTCACCATCTCCTGTATCCGTTGAAGAGTCCTCGCTGCCAAATATCAGTGACCTGATTGTTGATTGCAATTCTGAAGAGAACTCTACATCATCTAAGAAAAGCTGGGGTCGAGGACGTGGGAAGGGACGTGGACGAATTCATAGCCATCTCGACCGTAGCTATAGCTTGCCAGTTACATCATCTCTGCAGACGAGTGGCCAGGTTTTGTGTGAAGCATCTTCCAAACTTACTTCAAAGAGTCCAAGAATGCCTGATGGAACTAAAGGTTTCACTATGGGAAGAGGCAGGCCGTTCAGCTCTAAACCATTATTCAATAGGCTTGTTGACTGATAGACATGTAGGGAAATCTCTGTTTGTTAAGTAGGGTGGAAGGAACTATGACATTTTTTTTATGAGACCATCACAATTTTGCTGCTACATTATTTATTTAAATTTTGGTAATAATGGAGATGTTTGATAGGGTTTTGGTTACTGTGCAA 1911 41.65 MAQPNSEDKVSENPEMEVKKEIIYGDGDGSSNSNIANLAFRFNAQAPEFFPRTQTTQMPVTGYFHPYFHFLGGGPASSDWFFIGDQEPAYLIPNPNIQLPNFSKHARSEEIQQKIIKQVEYQLSDMSLLANETLSKHISKDPDGYVAISILSATKKVKSLSTNNSFIVQALRSSSRLVVSADGKKVRRKVPFTDKDREELLSRSVVAENLPENHSHHNLEKIFSVVGSVKTIRICHPPDSNPCCSKGELLISNKLHALVEYESPELAERAVEKLNDERNWRKGLRVRLMLRRSPKSVLKTRKSEFDSILDDDDSPSPVSVEESSLPNISDLIVDCNSEENSTSSKKSWGRGRGKGRGRIHSHLDRSYSLPVTSSLQTSGQVLCEASSKLTSKSPRMPDGTKGFTMGRGRPFSSKPLFNRLVD 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 52068617 52072666 + XM_039044624.1 Bhi10g02075 48416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g02075 422 SUPERFAMILY Winged helix DNA-binding domain 105 192 IPR036390 -
Bhi10g02075 422 Gene3D - 195 297 IPR012677 -
Bhi10g02075 422 SUPERFAMILY RNA-binding domain, RBD 188 296 IPR035979 GO:0003676
Bhi10g02075 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 293 IPR000504 GO:0003723
Bhi10g02075 422 PANTHER LUPUS LA PROTEIN-RELATED 10 413 IPR045180 -
Bhi10g02075 422 Pfam La domain 115 172 IPR006630 -
Bhi10g02075 422 ProSiteProfiles La-type HTH domain profile. 105 196 IPR006630 -
Bhi10g02075 422 SMART la 109 189 IPR006630 -
Bhi10g02075 422 PANTHER LA-RELATED PROTEIN 6C 10 413 - -
Bhi10g02075 422 CDD RRM_La_like_plant 203 290 IPR034878 GO:0003723
Bhi10g02075 422 SMART rrm1_1 204 289 IPR000504 GO:0003723
Bhi10g02075 422 MobiDBLite consensus disorder prediction 337 359 - -
Bhi10g02075 422 Gene3D - 107 194 IPR036388 -
Bhi10g02075 422 MobiDBLite consensus disorder prediction 385 422 - -
Bhi10g02075 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 276 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g02075 K15191 LARP7; La-related protein 7 - csv:101217948 682.945
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g00697 Bhi-Chr5:21453042 Bhi10g02075 Bhi-Chr10:52068617 9.95E-69 dispersed
Bhi10g00459 Bhi-Chr10:10097284 Bhi10g02075 Bhi-Chr10:52068617 5.09E-06 dispersed
Bhi10g02075 Bhi-Chr10:52068617 Bhi03g00827 Bhi-Chr3:15150655 7.01E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g467 . . . . . Bpe12g00064 . . . . Cma02g00438 . Car02g00296 . . . . . . . . . . . . . . . . . . Cone12ag1111 Cone8ag1153 . . Lsi10g00312 . Chy11g00436 . . Blo13g00567 Bda15g00027 . . . . . Sed01g0334 Cmo02g00443 . . . . . . Cpe05g01224 Bhi10g02075 Tan05g1392 Cmetu11g0139 . . . . Cla09g01715 Cam09g1809 Cec09g1871 Cco09g1964 . . Cre01g0696 . Csa02g01201 . Cme11g00508
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008129 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 2 1 35