Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g02092 TGTTTTTTTTATATAATTTTTGCTTTTGAATACTTAACGGTGTAAATTTTCCGGCCACCTTGTTTTGTTTCATTCTCCACCCACCGAGATCCACCACCGTCATCGCCGCCGCCGCCGCCGCCTCTCTCTCTCATAATATTATTTTATTGGAACGCTACATTCACAATAAAACCTCTTTCTCATTCCCAATCTCCTCCTCTTTCTCTCTCTCTTTCTCTCTAGTCTTCATTCAGCAGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAACCTGGTCTTACTCCTTCACACCCAACCAGGGCCGTCGTCTATCGCATATCTCGCCGGAGAGAGAGAGAAAAACGAAGAGTGCGGAGACGGAGACGGAGACCGAGATACTTTGAAGATCATGGCTCAGCCTTCCAACGGTGCTGATCTCAATCCACAAGCCCCTCATCCTCACCACCACCAATGGTTTCAACAACAGCAACAGTATCAACAGCAATGGATGGCGATGCAGTACCCTGCCGCCGCCATGGCCATGATGCACCAACAGCAGATGATGATGTATCCTCCTCAGCATTACATGGCGTATTCTCACCATCCTTATCAACAGCAGCAACAGCAACATCAACAGCCGTCGCAGCAGCAGCATCAGCAAGCTCAGTCGCAACGACCTCGCAGACAGGGGTCAACGGACGAGGTTAAGACGCTTTGGATTGGTGACCTTCAACCCTGGATGGACGAGACCTACCTCAATAATTGTTTCGCTCACACCGGCGAGGTTTTCTCTGTTAAGGTTATATGCAATAAGCAAACTGGTCAATCTGAGGGCTATGGTTTTGTTGAGTTCTACTCGCATGCAACAGCTGATAAAATATTGCAGAATTATAATGGTGCTATAATGCCTAACACAGATCTGCCTTTCCGTCTCAATTGGGCAACCTTTAGTTCAAATGATAGGCGACCGGACACTGGTTCTGACCTATCGATATTTGTTGGTGATTTGGCTGCCGATGTGACTGATGCTATGCTGCAAGAAACTTTTTCTAGTAGATATGCATCTGTTAAAGGAGCAAAGGTGGTTATTGATTCAAACTCAGGTCGTTCAAAAGGTTATGGCTTTGTCAGGTTTAGTGATGAAAATGAAAGAACAAGGGCTATGACGGAAATGAACGGAATATATTGTTCAAGTAGACCCATGCGCATTGGTGTTGCAACACCAAAGAAAGCATCTGGATATCAACAAGGTTATGCCTCACAAGCTTTGGTACTGGCTGGTGGACATGCCAATGGCATTGCTGTTCAGGGTTCACAATCAGATGGCGAGTCAAACAACACCACTATATTTGTTGGCGGCCTCGATTCTGATGTTAGTGATGAAGATCTCAAGCAGCCTTTCTCAAAATTTGGTGATGTTGTCTCTGTGAAAATCCCTATTGGAAAAGGATGTGGATTTGTGCAATTTGCTAACAGAAAGAATGCTGAGGATGCAATACAAGGACTGAATGGAACAGTTATAGGAAAGCAAACTGTTCGTCTTTCTTGGGGCCGAAGTACGGGGAACAAGCAGTGGAGAGGTGATTCTAATAACCAATGGAATGGGGGACGTTATGGTGGGCAAAGCTATGGCGGATATGGTGGCTACTACTCTGTACCACAGCATCAGGACGCAAATATGCATCCCACAGCTGCTTCAGTTAATGGCTCATCTTGAGAAAAGAAGAATATGGCAGCCATTGGCCATTACCACCATCGAATCGAAATCCGAGCCTTCAAAACACAAATCTCTTAGCTATAAATATATATAAACTTCATAATAGAGGGAGAACTTATTTAAGTTGTGGTTAGCCGAATCTTTATTTACTGAATCATATGGCTTGTTAACATTATTACTGCCTTCCCGGAGTCTTTTAGACTGCTTGTAGCTAGCTCATCTGAACAATTTTGGGGTATGTAGGTGGATATTTCTTGGCTGAGAGGGTATTTTTTTTAAAGATTAAATTTACAGATTATAATTATTATTTTTTCATC 2022 43.87 MAQPSNGADLNPQAPHPHHHQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMMMYPPQHYMAYSHHPYQQQQQQHQQPSQQQHQQAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLNNCFAHTGEVFSVKVICNKQTGQSEGYGFVEFYSHATADKILQNYNGAIMPNTDLPFRLNWATFSSNDRRPDTGSDLSIFVGDLAADVTDAMLQETFSSRYASVKGAKVVIDSNSGRSKGYGFVRFSDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYASQALVLAGGHANGIAVQGSQSDGESNNTTIFVGGLDSDVSDEDLKQPFSKFGDVVSVKIPIGKGCGFVQFANRKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDANMHPTAASVNGSS 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 52488776 52500236 + XM_039045083.1 Bhi10g02092 48433

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g02092 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 272 IPR000504 GO:0003723
Bhi10g02092 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 180 IPR000504 GO:0003723
Bhi10g02092 435 SUPERFAMILY RNA-binding domain, RBD 65 185 IPR035979 GO:0003676
Bhi10g02092 435 MobiDBLite consensus disorder prediction 1 25 - -
Bhi10g02092 435 CDD RRM3_NGR1_NAM8_like 310 381 - -
Bhi10g02092 435 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 20 433 - -
Bhi10g02092 435 MobiDBLite consensus disorder prediction 65 92 - -
Bhi10g02092 435 CDD RRM2_SECp43_like 192 271 - -
Bhi10g02092 435 SUPERFAMILY RNA-binding domain, RBD 303 413 IPR035979 GO:0003676
Bhi10g02092 435 CDD RRM1_SECp43_like 101 181 - -
Bhi10g02092 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Bhi10g02092 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 265 IPR000504 GO:0003723
Bhi10g02092 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 376 IPR000504 GO:0003723
Bhi10g02092 435 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 20 433 - -
Bhi10g02092 435 Gene3D - 57 183 IPR012677 -
Bhi10g02092 435 Gene3D - 184 286 IPR012677 -
Bhi10g02092 435 Gene3D - 293 419 IPR012677 -
Bhi10g02092 435 SMART rrm1_1 194 268 IPR000504 GO:0003723
Bhi10g02092 435 SMART rrm1_1 101 174 IPR000504 GO:0003723
Bhi10g02092 435 SMART rrm1_1 312 379 IPR000504 GO:0003723
Bhi10g02092 435 SUPERFAMILY RNA-binding domain, RBD 175 284 IPR035979 GO:0003676
Bhi10g02092 435 MobiDBLite consensus disorder prediction 65 98 - -
Bhi10g02092 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 383 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g02092 - - - csv:101215609 676.396
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g03353 Bhi-Chr9:85750866 Bhi10g02092 Bhi-Chr10:52488776 1.17E-156 dispersed
Bhi10g02092 Bhi-Chr10:52488776 Bhi12g00462 Bhi-Chr12:14858657 1.28E-134 dispersed
Bhi10g02092 Bhi-Chr10:52488776 Bhi04g00313 Bhi-Chr4:7321991 4.58E-173 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g393 . . . . . . . . . . . Cma20g00922 . Car20g00807 . . . . . . . . . . . . . . . . . . . Cone6ag1272 . . . Chy11g00460 . . . . . . . . . . . Cmo20g00929 . . . . . Cpe01g00435 Bhi10g02092 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117