Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g02136 TTATATCCATTTCCCGCCAAAACGAACAAGTTCTTCCCGCCATCACCGATCCCAAATCCAAAGGTTCTCAGATTCTGTAATCCCAAATTCACACCAACAAAATCCAAGTTAACATCAGCGCCGTCGAGGTCACATCTCTTCAGACATGGCGGACGAACAGCCCTCAGCCACTAATCGGCGGAGGAGCCGAGGATCTGAGGCAGCTGCCCGACTTTCGGCTCTCGAACGTCTGAAAGCCATCCGCAGCGGCGGCCGTCGATCGGACGCTGGTGGTTTCCAAGTGAAGTTAGAGAACCCAATCTACGATACGATTCCCGAGGATGAGTACGATGCTCTCGTTGCAAAGCGTCGCGAAGAAGCCCGTGGGTTTATTGTTGATGACGACGGCCTTGGATATGGAGATGAAGGTGAGGAAGAGGATTGGTCGAAAGCTGGGGTTTGTTCTTCCGATGAGTCTGATGGTGAGCTAGATAAACCTAAGAAGAGGAAAGTAGAGAAGAAAGAGGCGCAACCGAAGAAACCCTCTTCTTCTTCTCTATCGGCGGCGGCAGCAATGATGGGGAAACAAAAGCTTTCTTCGATGTTTACTTCATCGATCTTCAGGAAAACGGGTAGAGATGATAAGGCTAAAGGATTGGCTTGTGATAGTATTGTGGATGATGTGATTGCGGAATTTGCGCCAGATGAGACTGACAGAGAGAGGCGTAGAAAGGGGCAAATTGGAGCTATACCGATTTCGAGGACTGTGGTGTCTGTTCCTGCTGTGAAGTCCGAGGGATTAACTGCTCAGAGTCTTAATTTGACTGCCGGGTCTGAATTGATTAAGGATACTGAAAATGGGAACTCTGGAATTAACGGGGTTGTTACAAACAGTGATTTGGAGCCTGTGCGAGCTGGTGTAGAGGTCCAGGGAAATGGTGAGACTGAGGAGTTTTATCCGAAGGAGGACTTGAATTCTCAAATCAACTTGGATCCGGTTGAGCAATTACCTAATTCTTCGATCAAGGAAGATGTAATTGAGGACAGTAAGCCAATTATGGTTGAAACGAAGGCAGAACCGTTAGTGAAGAAGGAGCCGGTGAGTACTCTAAATGCTAAGATTAGCAATGAAAGAGACCCAGCTTTGAGTGCTACTGCGGGATGGCAAGCGGTAAGGAGTGAAGGGAGTGGAAGTGTTAATTCTTCAGCAGAAAGTGCCGAAGAGAAATCTGATTTTGATATTGACGCTGACGGCTCTCTCCCTTTCTATATCGTCGATGCGCATGAAGAGCTCTTCGGTGCAAATATGGGCACTGTATATCTATTTGGGAAGGTCAAAGCTGGGAATTCGTTCCACAGTTGTTGTGTGGTGGTGAAAAATATGCAAAGATGCATATATGCCATTCCAAGTGCTTCTTTTCTTCATTCGGATGAGATGTTGGAGCTTCGGAAGGATGCTGAACAGTCTCAGCTTTCTCCTGCAGACCTGCGTGCCAAATTGCAAGAAGTGACTGCAGGATTAAAAAATGAAGTAGCCAAGCAGTTGCTAGATCTCAATGTTTCAACATTTAGCATGACACCGGTTAAGAGGAAATATGCATTTGAGCGTCAAGACATACCTGCGGGGGAAAATTATGTGCTTAAGATTAATTACCCTTTCAAGCACCCCCCACTTCCTGCTGATCTAAAAGGAGAATCGTTCTGTGCTCTTTTAGGAACACATCGCAGTGCCTTAGAGCTTCTCCTCGTTAAAAGGAAAATAACGGGCCCCTCCTGGTTGTCGATTTCAAACTTTTCTTCCTGTCCTGCTTCTCAACGAGTGAGCTGGTGCAAGTTTGAGGTGATAGTTGGCTCTCCAAAAGATGTTCAAACTTCAACTTCATCAAGCAAAATTTTGGAGATTCCTTCTATGGTTGTCACTGCAATAAACATAAAGACCATCATTAATGAACGGCAGAATATCAACGAAATTGTGTCTGCATCTGTCATATGCTGTCAAAGAGCAAAGATTGACGGTCCCATGTTGGCCACAGAATGGAAAAAGCCTGGTATGCTTAGGCATTTTACTATTATCCGTAAGCTTGATGGAGGCATATTTCCTATGGGATTTGCTAAAGAGTCCACAGATAGAAATTTGAAGGCTGGATCAAATATTCTAATCTGCGAGGGCAATGAAAGGGCCTTGTTGAATCGATTAATGATTGAGTTATTCAAATTGGATAGTGATGTGCTGGTTGGACACAATATCTCTGGGTTTGACCTAGATGTTCTTCTCCATCGAGCCCAGTTTTGCCGAGTACCAAGCAGTATGTGGTCCAAAATAGGTCGTCTTAAGCGGTCTGTTATGCCTAAACTTGGAAAAGGAGGGAGCATTTTTGGGTCTGGAGCAAGTCCAGGACTCATGTCTTGTATTGCTGGCCGACTCTTATGTGATACGTACTTGTCGTCCCGTGACCTACTGAAGGAGATAAGTTATTCTTTGACTGAGCTAGCAAAGACTCAACTCAATAAGGACCGCAAGGAAGTCACTCCACATGAAATTCCAAAAATGTTTCAAGCATCCGAGTCTCTCATGAACCTGATTGAATATGGTGAGACAGATGCATGGTTGTCATTGGAACTCATGTTTCATTTAAGTGTTCTTCCCCTTACTCGACAATTGACTAATATCAGTGGTAATCTCTGGAGAAGAAGCCTACAGGGTGCTAGAGCCCAGAGAGTGGAGTATCTCTTACTTCATGCATTCCATGCCAAAAAATATATTGTCCCCGACAAGACTTCATCTTATGTGAAGGAAAAAAAGATGGTAAAAAAGAGAACGAATCATGGTCCTGAGGAAAAAAGTGTTGATGAGTTTGATTTAGATGATCCAAATGTAGAAGCTCCCAATACTGAAAGTGGAAAAGGCAAAAAGGGATCCTCCTATTCAGGTGGGCTAGTCTTGGAGCCAAAGCGTGGTTTATATGATAAGTATGTATTGCTCTTGGATTTCAACAGTCTGTACCCTTCCATCATTCAGGAATATAATATTTGCTTCACCACTGTTGAAAGATCTCCAGATGGTGTTGTTCCTCTACTGCCATCTAGTAAAGTGACTGGAGTTCTTCCTGAGTTGCTAAAAAATCTGGTTCAAAGGAGAAGAATGGTGAAGTCATGGATGAAGAATGCAACTGGTCTCAAGCTTCAGCAACTTGACATTCAGCAGCAGGCATTAAAGCTCACTGCCAACAGTATGTATGGATGTCTAGGGTTTTCTAATTCAAGGTTTTATGCAAAACCACTAGCAGAGCTTATTACTTCACAAGGAAGAGAAATTCTGCAGAGTACGGTTGATCTTGTCAAGAATAATCTGAACCTAGAGGTAATTTATGGCGATACAGATTCAATAATGATTCATAGTGGACTGGATGATATTGGCAAAGTGAAAGCAATTGCAGGAAAAGTTATACAAGAGGTTAACAAAAAGTACAAGTGCTTAGAAATTGATCTCGATGGTTTGTATAAGAGAATGTTGCTTCTGAAGAAAAAGAAATATGCTGCTGTAAAGTTGCAGTTTAAGGACGGAATGCCATATGAGGTTATTGAGCGCAAGGGTCTTGATATGGTTCGTCGTGACTGGAGCTTATTGTCAAAGGAATTAGGTGATTTCTGCTTAAATCAAATATTGTCTGGAGGGTCATGTGAGGATGTCATTGAATCAATACATGACTCACTTACGAAGATACAAGAGGATATGAGAAAAGGGCAAGTTGCACTTGAGAAATATATCATCACGAAGACACTGACTAAGCCACCTGAAGCTTATCCTGATGCCAGAAACCAACCACATGTTCAAGTTGCACAAAGGTTAAAACAAATGGGCTATTCAACTGGCTGTTCTGTTGGTGACACGATCCCATATATAATTTGCTGTGAGCAGGTTTGTGGAAGAGGTTCAAGATCTAACCAATTTCTTTTTCTCACAACCCAAGGGCGGGCTAGACATCCTGATGAATTGAAAAAAGAGGATGGAAAATGGATGATTGACATCGAATACTACCTTTCACAACAGATACACCCTGTGGTCTCTCGTCTATGTGCCTCAATTCAGGGCACCAGCCCAGAACGCTTGGCTGACTGTCTGGGGCTTGATTCATCAAAGTTTCAGAACAGATCAATTGAAGTTTCCCGAAATGATGTCTCCACTTCCCTCCTGTGTTCTGTAAATGATGAAGAAAGGTATCAGGGATGCACACCACTGACATTAACTTGCCCCAGCTGTTCTGGTACTTTTAATTGTCCTGGTATATTTAGTTCAATATACAAATCTGTGGAGGGAAAGCAAGAAAAGCCAGTTGATGAACCTACAAGCAAATTTTGGAATAATTTGAATTGTCCAAAATGTCCCGATGAAGCTAATGTGGGTAGAATGACCCCTGGAATGATTGCCAACCAGGTAAAAAGGCAAGCCGATAGGTTCATTTCACTGTATTATAATGGCTTAATGATGTGTGATGATGAAACTTGCAAATACGCCACACGTGCCGTAAATCTTCGAGTTATGGGTGACTCTGAGAAAGGAACCATCTGCCCAAACTATCCCCACTGCAATGGGCATCTAGTAAGAAAGTACACAGAAGCCGATTTGTACAAGCAGCTTTCGTATTTTAGTCACATTTTGGATACCGAACGCTGTATGGAAAAGTTGGAGGTTCATGCAAGGTTAACATTAGAGAAAGAAATGGCGAGAATTCGGCCGATAGTCGAGTTAGCTGCAACGACAATTCAAAGCATTCGGGATCGCAGTGCATATGGTTGGATGCAGTTGCAAAATTTTGTGGTAACATTTTGAGTTTGCATATATAACCGAGGTAGGCATGCTAGATATCCATTCATTTTACTCTTCTTTACATTGTATGTATATATGTCATATGGATAAATGCTCCTTAGAGGAAGCCAGGTGGAACTTTCGTTCCGTGTTCCACCGTTTGAATTGTTAATCAAATTTATAGCTACTTTTATGGATGATAGGTTTAGGCCAATATGAGTATAGTTCAAATTGTTACTATCAACTTTGAGGTTAAAAAA 5046 42.63 MADEQPSATNRRRSRGSEAAARLSALERLKAIRSGGRRSDAGGFQVKLENPIYDTIPEDEYDALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGVCSSDESDGELDKPKKRKVEKKEAQPKKPSSSSLSAAAAMMGKQKLSSMFTSSIFRKTGRDDKAKGLACDSIVDDVIAEFAPDETDRERRRKGQIGAIPISRTVVSVPAVKSEGLTAQSLNLTAGSELIKDTENGNSGINGVVTNSDLEPVRAGVEVQGNGETEEFYPKEDLNSQINLDPVEQLPNSSIKEDVIEDSKPIMVETKAEPLVKKEPVSTLNAKISNERDPALSATAGWQAVRSEGSGSVNSSAESAEEKSDFDIDADGSLPFYIVDAHEELFGANMGTVYLFGKVKAGNSFHSCCVVVKNMQRCIYAIPSASFLHSDEMLELRKDAEQSQLSPADLRAKLQEVTAGLKNEVAKQLLDLNVSTFSMTPVKRKYAFERQDIPAGENYVLKINYPFKHPPLPADLKGESFCALLGTHRSALELLLVKRKITGPSWLSISNFSSCPASQRVSWCKFEVIVGSPKDVQTSTSSSKILEIPSMVVTAINIKTIINERQNINEIVSASVICCQRAKIDGPMLATEWKKPGMLRHFTIIRKLDGGIFPMGFAKESTDRNLKAGSNILICEGNERALLNRLMIELFKLDSDVLVGHNISGFDLDVLLHRAQFCRVPSSMWSKIGRLKRSVMPKLGKGGSIFGSGASPGLMSCIAGRLLCDTYLSSRDLLKEISYSLTELAKTQLNKDRKEVTPHEIPKMFQASESLMNLIEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWRRSLQGARAQRVEYLLLHAFHAKKYIVPDKTSSYVKEKKMVKKRTNHGPEEKSVDEFDLDDPNVEAPNTESGKGKKGSSYSGGLVLEPKRGLYDKYVLLLDFNSLYPSIIQEYNICFTTVERSPDGVVPLLPSSKVTGVLPELLKNLVQRRRMVKSWMKNATGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVKNNLNLEVIYGDTDSIMIHSGLDDIGKVKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGMPYEVIERKGLDMVRRDWSLLSKELGDFCLNQILSGGSCEDVIESIHDSLTKIQEDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVAQRLKQMGYSTGCSVGDTIPYIICCEQVCGRGSRSNQFLFLTTQGRARHPDELKKEDGKWMIDIEYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQNRSIEVSRNDVSTSLLCSVNDEERYQGCTPLTLTCPSCSGTFNCPGIFSSIYKSVEGKQEKPVDEPTSKFWNNLNCPKCPDEANVGRMTPGMIANQVKRQADRFISLYYNGLMMCDDETCKYATRAVNLRVMGDSEKGTICPNYPHCNGHLVRKYTEADLYKQLSYFSHILDTERCMEKLEVHARLTLEKEMARIRPIVELAATTIQSIRDRSAYGWMQLQNFVVTF 1554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 53402330 53417424 - XM_039046792.1 Bhi10g02136 48477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g02136 1554 Pfam DNA polymerase family B, exonuclease domain 396 774 IPR006133 -
Bhi10g02136 1554 Pfam DNA Polymerase alpha zinc finger 1346 1550 IPR015088 GO:0003887|GO:0006260
Bhi10g02136 1554 Gene3D - 580 895 IPR036397 GO:0003676
Bhi10g02136 1554 MobiDBLite consensus disorder prediction 76 137 - -
Bhi10g02136 1554 Coils Coil 1094 1114 - -
Bhi10g02136 1554 MobiDBLite consensus disorder prediction 1 18 - -
Bhi10g02136 1554 Gene3D - 367 566 - -
Bhi10g02136 1554 Gene3D - 1144 1336 IPR042087 -
Bhi10g02136 1554 PRINTS DNA-directed DNA-polymerase family B signature 937 950 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bhi10g02136 1554 PRINTS DNA-directed DNA-polymerase family B signature 1013 1025 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bhi10g02136 1554 PRINTS DNA-directed DNA-polymerase family B signature 1066 1074 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bhi10g02136 1554 TIGRFAM pol2: DNA polymerase (pol2) 51 1304 - -
Bhi10g02136 1554 SUPERFAMILY DNA/RNA polymerases 864 1322 IPR043502 -
Bhi10g02136 1554 Gene3D - 407 533 - -
Bhi10g02136 1554 SUPERFAMILY Ribonuclease H-like 362 868 IPR012337 -
Bhi10g02136 1554 Pfam DNA polymerase family B 839 1306 IPR006134 GO:0000166|GO:0003677
Bhi10g02136 1554 CDD POLBc_alpha 913 1322 IPR045846 GO:0003887|GO:1902975
Bhi10g02136 1554 ProSitePatterns DNA polymerase family B signature. 1068 1076 IPR017964 GO:0000166|GO:0003676
Bhi10g02136 1554 Gene3D DNA Polymerase alpha, zinc finger 1345 1539 IPR038256 -
Bhi10g02136 1554 Gene3D Palm domain of DNA polymerase 919 1124 IPR023211 -
Bhi10g02136 1554 MobiDBLite consensus disorder prediction 1 20 - -
Bhi10g02136 1554 SMART polmehr3 580 1080 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bhi10g02136 1554 MobiDBLite consensus disorder prediction 878 920 - -
Bhi10g02136 1554 MobiDBLite consensus disorder prediction 88 124 - -
Bhi10g02136 1554 CDD DNA_polB_alpha_exo 580 831 - -
Bhi10g02136 1554 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Bhi10g02136 1554 PANTHER DNA POLYMERASE 350 1550 - -
Bhi10g02136 1554 MobiDBLite consensus disorder prediction 878 894 - -
Bhi10g02136 1554 Gene3D Helix hairpin bin 978 1029 - -
Bhi10g02136 1554 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 350 1550 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g01415 Bhi-Chr6:43323214 Bhi10g02136 Bhi-Chr10:53402330 5.41E-27 dispersed
Bhi06g01416 Bhi-Chr6:43323214 Bhi10g02136 Bhi-Chr10:53402330 3.62E-27 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g02136 K02320 - csv:101211201 2766.1