Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g02238 TCGTAGAGCTTGGAGCTCCGCTTAATTCCTCGCCATTCCGGTTGAAGTAGTTAAGACCTCCGACCGATCATGGCCAAGTGGTGGCGCTCCGCTGGAACGAACCTTAGGTTGGCGGCGTTTTCAACAGCTAGATCGGTATCGTTTCTATTTTCATCATATCGAGCTGCTTCATACCATACGATCCAAGCAATCCCTAGAGAGTGCAGCGGCAGCAGAATTTCGAGCAGAGATAGAGCTCAGGGAAGAATACCCGCCGTCGTTTTCAGTCAACAACTCCTTGAGAAAAACTCCGTCCACCGATCGCCGTCGCGGAAGCATCTGCTCACTACAGAGCAAAAGCAAATCCACTCCATTCTCAAATCCGTTGAGCTCCCTTTCTTTTGCTCCACTAGGTTTCAGCTCCAGATCCGTGCTGGTGCCGGATCTTCAGCCCTTCTTGAATCAGGATTCATCCTTCCAGTCAAAATTCATAGGGATGAAGTGACCGGGAAGATTTTGAATATTGTGTTTGTATGGGCTGATGAAGGCTCGGAGTTGAAGGTAGATGTGCCAATTGTTTTTAAAGGCGAAGAGACTTGCCATGGTCTTCAAAAAGGAGGTCAACTGAACAGGATAAGAACTAGCCTGAAATATCTTTGCCCGGCTGAACACATTCCTTCCAAGGTTGAGGTGGATGTAAGTAATCTGGACATTGGGGAGAGAATTTTCATTCGCGATGTAAACGTCCATCCTTCTCTGAAGCTACTTAGCAAAAACGAAGTCATGCCTATATGTAAAATAGTTGCAACGAACACAGAAACGGCAAACATAAAAATTTCAGAACCTTCATGACTACGGATTCGTTGAAACACATTTGGGTTCAGAATCTTTTGGTCTACTAAACTTGTGATTGAAGAGATAGAAGAATAACATCTAATCGGCATCAAGTTAGTGCACTAATTGGAAGATGTTATATGTTTAAGATCTTTTTTTTTTTTTTTATGTCGTGTTCTTGTATAAATTTGGAATGTTTTGCTCTGTTTCGCTTCTTCTGTTTACCGACTTTTTGATGCACTAGCTGAGATTTTTGATGAAGCTTAGGTTCATATGAGACCTTTTTTCTGGCTGGATAAAGTATCATAGAAGAGGAATGTTTGTTAAGGAATTATTGCCTCAATCATTGTTGTAGGAAGACGAGGAATAATGATGCCCTAGAGTTTATTTTGGTTCAATCATTACCGGACGGGGTGGAGATGGAACCATCCACTTTTGGAA 1254 42.66 MAKWWRSAGTNLRLAAFSTARSVSFLFSSYRAASYHTIQAIPRECSGSRISSRDRAQGRIPAVVFSQQLLEKNSVHRSPSRKHLLTTEQKQIHSILKSVELPFFCSTRFQLQIRAGAGSSALLESGFILPVKIHRDEVTGKILNIVFVWADEGSELKVDVPIVFKGEETCHGLQKGGQLNRIRTSLKYLCPAEHIPSKVEVDVSNLDIGERIFIRDVNVHPSLKLLSKNEVMPICKIVATNTETANIKISEPS 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 58207746 58211050 + XM_039046865.1 Bhi10g02238 48579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g02238 253 CDD Ribosomal_L25_TL5_CTC 37 147 IPR029751 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bhi10g02238 253 Pfam Ribosomal L25p family 38 147 IPR029751 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Bhi10g02238 253 Gene3D Ribosomal protein L25, beta domain 153 232 IPR037121 -
Bhi10g02238 253 PANTHER RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEIN 1 244 - -
Bhi10g02238 253 Pfam Ribosomal protein TL5, C-terminal domain 156 240 IPR020057 -
Bhi10g02238 253 SUPERFAMILY Ribosomal protein L25-like 42 239 IPR011035 GO:0006412
Bhi10g02238 253 PANTHER RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEIN 1 244 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g02238 K02897 RP-L25, rplY; large subunit ribosomal protein L25 - csv:101208580 421.394
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g02238 Bhi-Chr10:58207746 Bhi11g02882 Bhi-Chr11:77528758 1.66E-49 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g886 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0761 . . . . . . . . . . . . . . Sed02g0840 . . . . . . . . Bhi10g02238 Tan07g1016 Cmetu11g1488 . Hepe10g0820 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009407 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32