Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi10g02240 TTTATTTTCTATCAGCGCCGCGCAACTCCTCAACTCGCCCTCTCTCTCGCACAATCACTCTCCCTGTAATCATTCTCTCTCTCAACCGCTCCCCTCACGCCAGCATCCCCGCCGACGATCGCCTTCTCCACGTCAGCAGTCACGCTGATACCGTCGCACGCCGGAGCAGTCGTTGGAGGTAAGCAGAGCGTTTTCCTTCTCTCTCTCTCTCCGTCGCAGCTGCTGCCGTCTTCAGTCGCCGGCTACCGCCTGCATGTACACTGCCGCCGCCCTCGGTTGTACAAGATCCACGTGCAGCAGCAGCAGCCCAAAACGCTGAATTTTCCTTGTTGGGCATCTGTCTACGTTACCCACGACTCGTTGGACCTTGAGTTGACTTACCCACTTGGTTCCGGCTTCCGATCTCAGTTTTTGAATAGTTCGGAACATTATAAAGCAAGGTTGTTATATTAAGGAGAGGCGACCTTGAGTCAGAAATTTCTTGGGTAAATTCTTGAAGGCTTGATTGGGTCTCAAACGTTGAAACTGATCTGAGATTGTGATTTAGGATTGGACTGCCACATTTGTAAGTCGAAGGAGAATTTATTTGGTTGCTGGAAATTTGTTGAGGCACTTTTATCGACGACCTTACTTGAACAGGATTTGTTCTATAGGGGTTGTACAACTGTGTCCTTGAGTTCTAAGGCACTTTTCAAGAAATAGACATGAGAAATCTTTCATCAAATTCATCATTGCTTCTCAGCTCTCTTTTTAAAAACAAATCTTTTGGTTTGCAATCAGAAATTCCAATAAAGACTATTTTACGGTCATTATCTTCTGAGCATATCAAGCACAACAACGATGCTTCAGTTGAAACCTCTTCTAAGGTGGCATGTCAGAGCAACTTAGTTTCTTTAGAGTCCATTAATGGAAAATGTGACACCTCTCTCAATTCAGCTCTATCTGAAAGTCATGTGATAAACACTCTTTTAAGCAGCAAAAGTGATCCAGAATCAGCATTAGAGTACTTCAAAAGGATTAAGAAGGAGATGGAATTTGTCAAGTGCACTGATGCTCTATGTATCTTGCTTCTCATTTTGATGAATTCGGAAAAGACACACAGAGAAGTTCAGTATTTGCTCAATAAATTTGCTTCAGGAAACTCAGGCCCCTCTACTTGTCTTATGGACCGTTTAGTGGAATGCACAAAACTCTACAGTTTTTCATTGGATATTCAGGTTTTTAATTATTTGTTGAGTAGTTACGTTAGAGCTAACAAAATTGAAGAAGCTCTTTGTTGTTTTAATAAAATTGTAGAATTTGATATAACGCCATCAGTTCGGTATATGAATATTCTTTTGACTGCCATGGTTAGGAAAAACATGATTTGCGAAGCACGGGAATTGCATAACAAAATGTTGCTGGTAGGAGTTCCAGGTGACTGTTTTACATTGCATATTATGTTGCGTGCTTGTTTGAAGGAAATGAATATTTTGGAGGCAGAGCAACATTTTTTACAAGCAAAAGAAAGAGGAGTGGAACTTGATAAAAAAACATATAGTATTTTTGTCCATGTGGTTTGTTTGAAACCGAACTCTGGATATGCTCTGTCTTTGTTAAGAGAGATGAGGGCAAGAGGTTGGGTTCCTTCCGATGATACATTTACAAGTGTTATTACTGCTTGTGTGAAGGAAAGGAACATGGCAGAGGCTTTGAGGCTGAAAGATGACATGGTCAATTTTGGGAAGTCTATGAATTTGGCTGTTGCAACAAGTTTGATGAAGGGTTATTGCATGCAAGGAGACCTGAGAAGTGCTTTAGATCTGGTGACTGAAATAAGCGAGAGTGGTCTGGTGCCCAACGAAGTTACATACTCAGTTCTGATTGATGGTTGTTGTAAGAATGGGAATATTGAAAAGGCATGTGAGTTTTACTCTGAAATGAAAACTAAGGGCATTCGGTCAAGTGTTTATTCTTTGAATTCTATAATACAAGGGTATTTGAAATGTCAATCTTTGCAAAATGCATTCATGATTTTTAATGACGCAGTTGAGAGCGGTCTTGCAAATGTTTACACGTTTAATATTTTATTGTCTTGGCTTTGTAAGGAGGGTAAGGTTAATGAAGCTTGCAATTTATGGGATGAGGTGATTGTTAAGGGTATCAGCCCTAATGCAGTTTCTTACAATAACATAATGCTCGGTCACTGTAGAGAAGGTAATATTAATGCAGCATGTAAGGTGTACAAGGAGATGCTAGATAATGGTTTTACCCCAAATGTATATACCTTTTCTATTCTAATGGATGGTTATTTCAAGAAAGGTGATATTGACAATGCTTTTAGTATATTTCACAGGATGATGGATGCTAACATTCTCCCCACAGACGTCACATCAGGCACTATAATCAAAGGTTTGTGCAAAGCTGGTCGTACCTCTGAGGGAAGAGATTTGTTTAAGAAGTTTGTTTCTCAAGGCTTTGTTCCTACGTGTATGGCTTACAATATTATTATTGATGGTTTCGTCAAGGAAGATGACATTAATTTGGCCTTGGATGTTTATAGGGAAATGTGTGAAGTTGGCATTACTCCTAGTGTTGTCACCTATACGTCCTTGATTGATGGATTTTGTAAAAGCAATAATATAGATCTTGCTTTAAAGTTGTGGAATGATATGAAAAGGAAGGGTCTTGAATTGGACGTTACAGCATATGGCACTCTCATCGACAGTTTTTGCAAAAGAAGGGATATGAAAAGTGCACATGAACTTTTTAATGAACTTCTAGGAGCTGGTTTATCTCCAAATGTTATCATTTACAATAGCATGATTACTGGGTTTAAGAATCTGAACAACATGGAAGCAGCTATTGACTTATATAAGAATATGGTGAATGAGGGTATTCCATGTGATTTGATAACGTATACCTCATTGATTGATGGACTGCTGAAAGAAGGAAGACTTCTCTACGCATCAGATCTCTACAATGAAATGCTTTCCAAGGGTATATTGCCTGATGATCAAACATACACAGTTCTAATCAATGGTCTTTGTAACAAAAGGCAATTGGAGAACGCACACAGGATTTTGGAAGATATGAACGGAAGAAACATGACTCCTAGTGTTCTGATTTATAACACATTGATAGCTGGGCACTTTAAGGAAGGGAATTTGCAAGAGGCTTTTAGGTTGCATGATGAGATGCTTGCTAGAGGTCTTGTTCCTGATAATACTACCTATGATATTCTTGTCAGTGGAAAGTTCAAAGGGGATTGTAATTATAGTAGAGATTTGAGTTTCTAGGTTGCTAGACTCGCCCTTCTGTACTGTTACCAAAAGAAAGCATGGTTATTAGGTGTGTTTTCTTTTTCATTTTGGATACGTCAAAGAGGTTCCCGTATTTGCTCATTTTCAGTTTCAAAGTGGGATGTGAAGACGGCATTTGGAGTGTGTCAACCTAGTTGAGATAGTCGGATTGAAATAGTTTGCATGGCAAACATGGACTTCTTAATTCACAAACCCAATAGATTAAATCAAAGACTAGTATATCCAATTCTGCTCCTCAAACATCCCCCTACTGTTATTGTAAGGCTAAATGCAACATAGTTTCTATTTCATGTACTTTTTTTCTCTCTCTCGAATTCATTGGGATTTTGAGTTTAGAGCTTGGTCTTAAATTTCGACTTTTAAAGATGTGATTTCTTTTACAATTTGCATCTCTAGAACATTCAAGAAGGCTTGATCTTCACACTGGTTGAGTATTCAAATGTGATATTAGTTAAAGGACTTTGTTTTTATCTTACCATTGATCACTAGATTATGAAGATAGTCCACTTCTAATCTTCCATTAGGATTTTGAGTGTTCTAGGGTTTTTGAGTTAGGAATCACAGTGGTTCATATCTTCAAATAAAACGTGTTTCAAATTTGTTGGTTTGAGTTAATTGTAGATAGCTAGACTAAAGTCTAAAGAATTTCTCTAGACAACTCAACAAATATGAAATTTCATAACCATGAAAGATTATAATAATTATACTCCCTGACTCTTTTTTTAGAATTTGAATCTGCCATTGAAGAAAGAGTAGTGTCATGACAGTTCATTAAAAAAAAAAACTACCATAATTGGATGTTTTATGACATCTAAA 4118 38.05 MRNLSSNSSLLLSSLFKNKSFGLQSEIPIKTILRSLSSEHIKHNNDASVETSSKVACQSNLVSLESINGKCDTSLNSALSESHVINTLLSSKSDPESALEYFKRIKKEMEFVKCTDALCILLLILMNSEKTHREVQYLLNKFASGNSGPSTCLMDRLVECTKLYSFSLDIQVFNYLLSSYVRANKIEEALCCFNKIVEFDITPSVRYMNILLTAMVRKNMICEARELHNKMLLVGVPGDCFTLHIMLRACLKEMNILEAEQHFLQAKERGVELDKKTYSIFVHVVCLKPNSGYALSLLREMRARGWVPSDDTFTSVITACVKERNMAEALRLKDDMVNFGKSMNLAVATSLMKGYCMQGDLRSALDLVTEISESGLVPNEVTYSVLIDGCCKNGNIEKACEFYSEMKTKGIRSSVYSLNSIIQGYLKCQSLQNAFMIFNDAVESGLANVYTFNILLSWLCKEGKVNEACNLWDEVIVKGISPNAVSYNNIMLGHCREGNINAACKVYKEMLDNGFTPNVYTFSILMDGYFKKGDIDNAFSIFHRMMDANILPTDVTSGTIIKGLCKAGRTSEGRDLFKKFVSQGFVPTCMAYNIIIDGFVKEDDINLALDVYREMCEVGITPSVVTYTSLIDGFCKSNNIDLALKLWNDMKRKGLELDVTAYGTLIDSFCKRRDMKSAHELFNELLGAGLSPNVIIYNSMITGFKNLNNMEAAIDLYKNMVNEGIPCDLITYTSLIDGLLKEGRLLYASDLYNEMLSKGILPDDQTYTVLINGLCNKRQLENAHRILEDMNGRNMTPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLARGLVPDNTTYDILVSGKFKGDCNYSRDLSF 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 58292575 58299866 - XM_039044613.1 Bhi10g02240 48581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi10g02240 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Bhi10g02240 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Bhi10g02240 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 728 762 IPR002885 -
Bhi10g02240 857 Pfam PPR repeat 375 407 IPR002885 -
Bhi10g02240 857 Pfam PPR repeat 448 474 IPR002885 -
Bhi10g02240 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Bhi10g02240 857 SUPERFAMILY HCP-like 391 623 - -
Bhi10g02240 857 Pfam PPR repeat 555 585 IPR002885 -
Bhi10g02240 857 Pfam PPR repeat 696 725 IPR002885 -
Bhi10g02240 857 Pfam PPR repeat 417 446 IPR002885 -
Bhi10g02240 857 Pfam PPR repeat 591 620 IPR002885 -
Bhi10g02240 857 Pfam PPR repeat 172 200 IPR002885 -
Bhi10g02240 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 623 657 IPR002885 -
Bhi10g02240 857 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 39 850 - -
Bhi10g02240 857 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 39 850 - -
Bhi10g02240 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Bhi10g02240 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 553 587 IPR002885 -
Bhi10g02240 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Bhi10g02240 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 798 832 IPR002885 -
Bhi10g02240 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 517 IPR002885 -
Bhi10g02240 857 Pfam Pentatricopeptide repeat domain 266 322 IPR002885 -
Bhi10g02240 857 Gene3D Tetratricopeptide repeat domain 394 503 IPR011990 GO:0005515
Bhi10g02240 857 Gene3D Tetratricopeptide repeat domain 83 290 IPR011990 GO:0005515
Bhi10g02240 857 Pfam PPR repeat family 797 843 IPR002885 -
Bhi10g02240 857 Pfam PPR repeat family 728 776 IPR002885 -
Bhi10g02240 857 Pfam PPR repeat family 622 671 IPR002885 -
Bhi10g02240 857 Pfam PPR repeat family 482 529 IPR002885 -
Bhi10g02240 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 658 692 IPR002885 -
Bhi10g02240 857 Gene3D Tetratricopeptide repeat domain 603 703 IPR011990 GO:0005515
Bhi10g02240 857 Gene3D Tetratricopeptide repeat domain 513 602 IPR011990 GO:0005515
Bhi10g02240 857 Gene3D Tetratricopeptide repeat domain 291 393 IPR011990 GO:0005515
Bhi10g02240 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 693 727 IPR002885 -
Bhi10g02240 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 763 797 IPR002885 -
Bhi10g02240 857 SUPERFAMILY HCP-like 91 272 - -
Bhi10g02240 857 TIGRFAM PPR: pentatricopeptide repeat domain 381 412 IPR002885 -
Bhi10g02240 857 TIGRFAM PPR: pentatricopeptide repeat domain 349 380 IPR002885 -
Bhi10g02240 857 TIGRFAM PPR: pentatricopeptide repeat domain 696 728 IPR002885 -
Bhi10g02240 857 TIGRFAM PPR: pentatricopeptide repeat domain 766 798 IPR002885 -
Bhi10g02240 857 TIGRFAM PPR: pentatricopeptide repeat domain 591 623 IPR002885 -
Bhi10g02240 857 TIGRFAM PPR: pentatricopeptide repeat domain 312 344 IPR002885 -
Bhi10g02240 857 TIGRFAM PPR: pentatricopeptide repeat domain 559 589 IPR002885 -
Bhi10g02240 857 TIGRFAM PPR: pentatricopeptide repeat domain 450 484 IPR002885 -
Bhi10g02240 857 TIGRFAM PPR: pentatricopeptide repeat domain 661 694 IPR002885 -
Bhi10g02240 857 TIGRFAM PPR: pentatricopeptide repeat domain 520 553 IPR002885 -
Bhi10g02240 857 TIGRFAM PPR: pentatricopeptide repeat domain 172 204 IPR002885 -
Bhi10g02240 857 TIGRFAM PPR: pentatricopeptide repeat domain 485 519 IPR002885 -
Bhi10g02240 857 TIGRFAM PPR: pentatricopeptide repeat domain 625 659 IPR002885 -
Bhi10g02240 857 TIGRFAM PPR: pentatricopeptide repeat domain 730 763 IPR002885 -
Bhi10g02240 857 TIGRFAM PPR: pentatricopeptide repeat domain 801 833 IPR002885 -
Bhi10g02240 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 482 IPR002885 -
Bhi10g02240 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 518 552 IPR002885 -
Bhi10g02240 857 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Bhi10g02240 857 Gene3D Tetratricopeptide repeat domain 704 850 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi10g02240 - - K15336 csv:101216262 1420.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi10g00836 Bhi-Chr10:16901036 Bhi10g02240 Bhi-Chr10:58292575 2.31E-07 dispersed
Bhi10g02240 Bhi-Chr10:58292575 Bhi10g02242 Bhi-Chr10:58293596 0 dispersed
Bhi10g02240 Bhi-Chr10:58292575 Bhi10g02241 Bhi-Chr10:58293596 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g841 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0933 Cone1ag1687 Cone10ag0605 Cone3ag0631 . . . . . . . . . . . . . . . . . . . . . Bhi10g02240 . . . . . . Cla03g01037 Cam03g1082 Cec03g1087 Cco03g1076 Clacu03g1056 Cmu03g1643 Cre03g1343 Lsi06g00706 . . Cme02g00920
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005083 1 7 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 5 1 1 41