Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00020 GGAAGAAAACCACTGTGAATCCGACACGGAATAGCCCTAGGGCTCCAAATTCCGTCGTCTTCATCCATTCGCCTCAATTACATTCGACCTCTAACATTCGCAGCAATTCCTGAAGAACAGTGATGGGGAAGAAGAAAACCACCGACCCCAAAAATACCCCCGACGATATCGCCACTGTTTCTGCTCCGTTCAGCGTTTTCGAGACTCTGTTCGGCAGGGCCGGAGTAGAAAACCCCGGCGTCTCTATCTTCTCCAGTGACAATCCTTTTCGTAGGAAAGATTCAGATTCCAATCCTGCACCTGCTGAAAAATCTCCTACTGGTACCTCTGATACTCGTTATGTCGATGATGTAAAGAGTAGGAAGAAAGGCAAGGAGAAAAGGGTTGGTACTGATTTGGATTCTGCCGAGGAAGGTGTTAAAAGTTCGTCGGAGATTAAGAAATCGAAGAAGAAGGAGAAGTCTCGGGACCGCGGATTGGATAATGTAGATGATGATGATGATGGAGAAAGGGGTTCCAAATCGCAAGGCGTATTGAAGAAGAATAAGAAGAAAAGTGCTGTTTTGGGCTCTGAAACTACAGAAAAGAGTCCCGAATTTTCCGGAGAATTGAAGATGGATGACCAAAGGGTTGACAGTAAACTCGGTGAGAATGTGAAATCGATGAAAGAGAGGAAGAAGAGGAAGAGAGATGAACTTGAGAGAGAGTATGAAACGAAAAAGTATGGTGTATCAGAAGTAGCTGAAGATGAAGGGGAAGGTTCAGGGGGCAATGTTGTTGGGAAGAAGAGGAAAGCATTGGATGATTCTTCAGAGATGATGGTTACAAAGGAAGGATTTGATGATGAAAGCAAGCTTTTGAGAACTGTGTTTGTTGGGAATTTGCCATTGAAAGTCAAGAAGAAAGCTTTAGGCAAGGAGTTTAGCCAATTTGGAGAGATAGAATCTGTTAGGATCCGGTCTGTACCAATTGACATTGCCAATAGCAAAAAACCGAGGAAGGGGGCAATCCTTTCTAAGAAACTCAACGAAGCTGCTGACAGTTCTCATGCATTCGTCGTTTTTAAAACGGAGGAATCAGCACAGGCTGCTTTGTCTCATAACATGGCTGTGTTTGCAGGAAATCATATACGTGTAGATAGAGCATGCCCACCGCATAAAAAGTTGAAAGTAGGAAATGGGCCGATCTATGATCCCAAGAGAACTGTTTTTGTGGGTAACCTTCCATTTGATGTAAAGGATGAAGAACTGTATCAATTATTTTGTGGAATCAGCAATATGGGATCCAGTGTTGAGGCTATTCGGGTCATTAGGGATCCCAAGGTGAACGTAGGGAAGGGCTTTGCATATGTCTTCTTTAAAACAAGGGAAGCAGCAAACTCCGTAGTTAATAATCAAAAACTAGAGTTGCGTGGTCGAACACTGAGGCTCTTTCATGCCAAACCAAATCCAACATCGACGCCACTTACGAAACGGAAGAGGCCACCTACAGAAGCTGATTACACCCCAGCAAAGAAAAATGCAGTGGCTTCAGGTGTAGGGACACCAGACAGCAGCAAAAGGGTAACGCCGAAAGCGACTATTGCATCCTATCAGGGCTTGCGTGCGAGCAAGAGTGGTTCCCAGAAGAAGATCCATACCAAAGGAAGTAGCACGAAATGGCCGAAATCACATTCAAACAGTAAAGAGAAGCCAGTGGATCACAAGAGGAAAAGACCAGAGAAGACAAGTGAAAGAAAGGGGAAAAGACCAGCAGTTGCCAACAGAAAGGCTGTGGTGAAGGCGACGAAAAATGGCGTTGCATCGCCAAAACAGGCTGGGGTGAAGCGCAAGTCCGATAGCCGAACTCCAGGGAGCTCTCAAAGGAACAAGAGAGTCAAAAGGTTTAGATAGGAAACACCGGAGGAAACAAAGATCATATTGAAACTTTCTCTGTATTATTTTATTTATGTGGCTTATTGACCGACTTCTGGATCAAGGAAAAGTTGGCACAAATCTACTTTTTGATGCCGTTTTTGTCTCTCATTGACATGTTAATTAAGACGTCGTTAACTGCCGGTTTTGGTTTTTGGCTTTTGGCTTTGAAAAA 2088 44.16 MGKKKTTDPKNTPDDIATVSAPFSVFETLFGRAGVENPGVSIFSSDNPFRRKDSDSNPAPAEKSPTGTSDTRYVDDVKSRKKGKEKRVGTDLDSAEEGVKSSSEIKKSKKKEKSRDRGLDNVDDDDDGERGSKSQGVLKKNKKKSAVLGSETTEKSPEFSGELKMDDQRVDSKLGENVKSMKERKKRKRDELEREYETKKYGVSEVAEDEGEGSGGNVVGKKRKALDDSSEMMVTKEGFDDESKLLRTVFVGNLPLKVKKKALGKEFSQFGEIESVRIRSVPIDIANSKKPRKGAILSKKLNEAADSSHAFVVFKTEESAQAALSHNMAVFAGNHIRVDRACPPHKKLKVGNGPIYDPKRTVFVGNLPFDVKDEELYQLFCGISNMGSSVEAIRVIRDPKVNVGKGFAYVFFKTREAANSVVNNQKLELRGRTLRLFHAKPNPTSTPLTKRKRPPTEADYTPAKKNAVASGVGTPDSSKRVTPKATIASYQGLRASKSGSQKKIHTKGSSTKWPKSHSNSKEKPVDHKRKRPEKTSERKGKRPAVANRKAVVKATKNGVASPKQAGVKRKSDSRTPGSSQRNKRVKRFR 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 324057 327761 - XM_039049400.1 Bhi11g00020 48732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00020 589 SUPERFAMILY RNA-binding domain, RBD 354 453 IPR035979 GO:0003676
Bhi11g00020 589 MobiDBLite consensus disorder prediction 34 226 - -
Bhi11g00020 589 Coils Coil 175 198 - -
Bhi11g00020 589 CDD RRM1_RBM34 247 339 IPR034220 -
Bhi11g00020 589 PANTHER RNA-BINDING PROTEIN 34 45 587 - -
Bhi11g00020 589 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 247 343 IPR000504 GO:0003723
Bhi11g00020 589 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 360 441 IPR000504 GO:0003723
Bhi11g00020 589 MobiDBLite consensus disorder prediction 471 515 - -
Bhi11g00020 589 Gene3D - 356 458 IPR012677 -
Bhi11g00020 589 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 45 587 - -
Bhi11g00020 589 MobiDBLite consensus disorder prediction 437 589 - -
Bhi11g00020 589 SMART rrm1_1 361 437 IPR000504 GO:0003723
Bhi11g00020 589 SMART rrm1_1 248 339 IPR000504 GO:0003723
Bhi11g00020 589 MobiDBLite consensus disorder prediction 516 544 - -
Bhi11g00020 589 Gene3D - 244 348 IPR012677 -
Bhi11g00020 589 SUPERFAMILY RNA-binding domain, RBD 241 352 IPR035979 GO:0003676
Bhi11g00020 589 MobiDBLite consensus disorder prediction 157 207 - -
Bhi11g00020 589 MobiDBLite consensus disorder prediction 73 136 - -
Bhi11g00020 589 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 362 435 IPR000504 GO:0003723
Bhi11g00020 589 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 249 281 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00020 K14837 NOP12; nucleolar protein 12 - csv:101206555 869.766
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g00020 Bhi-Chr11:324057 Bhi01g01179 Bhi-Chr1:23157354 2.87E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g690 . Blo03g00119 Bda06g01271 . . Bpe07g00216 . . . . . . . . Sed13g0485 . . Bhi11g00020 Tan01g2206 Cmetu06g0815 . . Mch10g1675 . Cla10g00146 Cam10g0141 Cec10g0151 Cco10g0151 Clacu10g0145 Cmu10g0992 Cre10g0403 Cone8ag0607 . . . Lsi07g01181 . . Cme06g02459 . . . . . . . Bma12g00215 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00155 Chy06g02154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010480 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g00020 Bhi_Chr11 FPKM 2.887729 2.507555 4.36128 3.854625 6.170287 6.006132 5.873853 10.913725 9.301603 9.083116