Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00104 TGTGGCAGCGAGAAGAGAAGGGATTGATTGGTATACTTCCCGTTCGAGATGATGCTGACGCATCAGCGATTGGCCCTGTGTTATCTCAAGGAAAAAAATAAAATAAAATAATGGTCAGGTATGGGAAGTGATTCTGGTGATCGTAGCTCAAGGGTTCAATCTGGAGCCTCTGACTCACAAAGAGTAGATGGGAAAAATCATCAGGAAGTTATTCAATGGCATTCAAGGGGTGTTGCTGCTCGTGCCTTGCAGCTATCTAGAGGAGTGGAGAAACCAAGTGGAAGAGTGACATATACGGTTGTGCTAGAAGGTTTATGTAGATTTACTGTCCAGGAACTTAGCACCAGAGGAACATATTATACTGCACGAGTATCACCTTCAGAAATGACAAAGGCAGAGATGGAGCAAGTGGAGCAAGACCCAGATTTTATTTCATTATCTCGACAATTCAAAGCTACTGCAATGGAGCTTATATCCGTTCTTGAACAGAAACAAAAAACTGGAGGGCGGACAAAAGTTCTTTTGGAGACAGTTCCAGTTCATAAACTGGCTGATATATTTGTTGCCAGTTTTGAGATGAGTTTTGAAGAGCAACTATCTATGCTGGATTCAGTTGATTTAAGAGTAAGGCTTTCAAAAGCAATGGAGTTAGTTGACAGGCATTTACAGTCGATACGTGTAGCAGAGAAGATTACGCAGAAAGTAGAAGGACAGCTATCAAAATCACAGAAAGAATTCCTTTTGCGTCAGCAGATGAGAGCCATTAAGGAGGAGCTTGGTGATGAGGATGATGAAGATGATTTGGTTGCCCTGGAAAGAAAGATGCAAAGTGCTGAAATGCCTGCTTATATCTGGAAGCATGCTCAGAGAGAGTTGAGGAGCCTTAAAAAAATGCAACCTCAACAACCTGGATATAACAGCTTGCGAGTTTACCTTGAGCTTCTTGCTGACCTTCCATGGAAAAAGGCTACTGAAGAAAATGAATTAGACTTGAAAGCTGCAAAGGAACGTCTTGACAGTGACCATTATGGTTTGGTCAAGGTCAAGCAACGAATTATTGAATATCTTGCTGTTCGGAAGCTTAAGCCAGATGCAAGAGGGCCTGTGCTGTGCTTTGTTGGGCCACCGGGTGTGGGGAAGACATCTTTGGCATCATCTATTGCTGCTGCTCTAGGCAGAAAATTCGTACGCATATCCCTGGGTGGTGTTAAAGATGAGGCTGATATTAGAGGACATAGGAGGACCTACATTGGAAGCATGCCAGGGCGTCTTATTGATGGACTGAAGAGAGTAGCTGTTTGCAACCCAGTCATGCTATTAGATGAGATTGACAAGACAGGTTCTGATGTGCGAGGTGATCCAGCTTCAGCTCTACTGGAGGTTCTTGACCCTGAACAGAACAAAAAGTTCAGTGATCACTATTTGAATGTCCCATTTGACCTTTCAAAGGTTGTCTTTGTGGCCACTGCTAACAGAATGCAGCCTATACCGCCTCCTCTTCTAGATAGGATGGAAGTCATTGAGCTGCCTGGATACACACCAGAGGAAAAACTTAAGATTGCAATGCACCATTTGATTCCACGAGTTTTGGAACAGCATGGGCTAAGTGCTGAATTTCTTCAAATTCCAGAGGCAATGGTTAAACTTGTGGTTCAAAGATACACTAGAGAGGCTGGTGTACGAAATCTTGAGAGGAATTTGGCCGCGTTGGCTCGTGCTGCTGCTGTTAGGGTTGTGGAAAGAGATCAAGCTGTCCCATTGAATAAAGATGTGCATCAGGTTTCTTCTCCTCTGTTGGAAAACAGACTTTCTGATGCAGCTGAAGTAGATATGGAGGTCATCCCAATTGGAGCGGACCATGAGATACCGAACCCGTTGAGGATAGCCTCTCCATTGGTCGTTGATGAGGCTATGCTTGAAAAAGTGCTTGGGCCTCCTAGGTTTGATGACAGAGAGGCAGCCGAGCGGGTTATATCACCTGGGATATCTGTTGGCTTGGTTTGGACTGCCGTTGGGGGAGAGGTTCAGTTCGTGGAGGCTACAGCAATGTCCGGGAAGGGAGAATTACATCTCACCGGCCAGCTTGGTGACGTCATTAAAGAATCAGCCCAGATAGCCCTTACCTGGGTCCGAGCAAGGGCAACAGATCTGAAACTGGCATCAGCTTGTGAATCTAATCTTTTGGAGGGTCGTGATATTCATATACATTTTCCTGCTGGTGCGGTGCCTAAAGATGGGCCTTCAGCTGGTGTGACTCTTGTAACAGCCCTGGTCTCACTATTTGGTCAGAAAAGAGTTAGGGCTGATACTGCAATGACAGGAGAAATGACTCTGAGGGGTCTTGTTCTACCTGTTGGTGGCATCAAGGACAAGATATTAGCCGCTCATCGTTATGGAATAAAGAGAGTTATTCTGCCAGAGAGAAATTTGAAAGATTTAGTGGAAGTTCCTTCCGGCGTGCTTGCTAGTATGGAGATATTACTAGCAAAGCGGATGGAAGACGTACTGGAGCAGGCTTTTGAAGGTGGATGTCCATGGAGATTACACTCCAAGTTATGACAAAGCACACGTGGCATGATAATTGTCTAAAACCCGAGCGATTGAATATTAGCACATTGCTGTATCCATCGAGTAAAAAACTACTAATCGATTTTGGTCGGAGCTGGGTCTGGCTAATCAAGCATTGCTCATTATTCTTGTGCAAGAAGTTACCCAATTTGCTGCAGAAAGTTACGATTGGTTTGCATAAAAACCATGGTATGTAATATTCTTTCAAGTTTCTAATGAACGTTCATCGGCTACTGCGCTTTTTCCTGCTCGTGATTATTCTCCATGTAATTATGAAAATAATTCTGTATTTATATATGAAAAAACAGATCTTTAATTAGTCTTATTAATGTTTTCAAATGTGGAATAAGAGTATAAGCAAAAGTGTACGGAAAGAAAGGAAGGATATATAGTGATGTATAACTAATCTTACTGAAATACTGCTTGTTGACTTCAATTATTTCATTTTCATA 3020 43.15 MGSDSGDRSSRVQSGASDSQRVDGKNHQEVIQWHSRGVAARALQLSRGVEKPSGRVTYTVVLEGLCRFTVQELSTRGTYYTARVSPSEMTKAEMEQVEQDPDFISLSRQFKATAMELISVLEQKQKTGGRTKVLLETVPVHKLADIFVASFEMSFEEQLSMLDSVDLRVRLSKAMELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDEDDEDDLVALERKMQSAEMPAYIWKHAQRELRSLKKMQPQQPGYNSLRVYLELLADLPWKKATEENELDLKAAKERLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVAVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKKFSDHYLNVPFDLSKVVFVATANRMQPIPPPLLDRMEVIELPGYTPEEKLKIAMHHLIPRVLEQHGLSAEFLQIPEAMVKLVVQRYTREAGVRNLERNLAALARAAAVRVVERDQAVPLNKDVHQVSSPLLENRLSDAAEVDMEVIPIGADHEIPNPLRIASPLVVDEAMLEKVLGPPRFDDREAAERVISPGISVGLVWTAVGGEVQFVEATAMSGKGELHLTGQLGDVIKESAQIALTWVRARATDLKLASACESNLLEGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFGQKRVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPERNLKDLVEVPSGVLASMEILLAKRMEDVLEQAFEGGCPWRLHSKL 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2571245 2581968 + XM_039048801.1 Bhi11g00104 48816

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00104 812 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 11 812 - -
Bhi11g00104 812 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 11 812 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Bhi11g00104 812 CDD AAA 311 472 - -
Bhi11g00104 812 Gene3D - 12 86 IPR046336 -
Bhi11g00104 812 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 334 353 - -
Bhi11g00104 812 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 620 636 - -
Bhi11g00104 812 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 702 721 - -
Bhi11g00104 812 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 732 751 - -
Bhi11g00104 812 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 755 773 - -
Bhi11g00104 812 Gene3D - 88 223 - -
Bhi11g00104 812 Gene3D - 619 804 IPR014721 -
Bhi11g00104 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 279 547 IPR027417 -
Bhi11g00104 812 SUPERFAMILY PUA domain-like 28 179 IPR015947 -
Bhi11g00104 812 TIGRFAM lon: endopeptidase La 26 800 IPR004815 GO:0004176|GO:0005524|GO:0006508
Bhi11g00104 812 Gene3D - 470 608 - -
Bhi11g00104 812 SMART lon_5 4 180 IPR003111 -
Bhi11g00104 812 MobiDBLite consensus disorder prediction 1 21 - -
Bhi11g00104 812 PIRSF Lon_proteas 12 567 IPR004815 GO:0004176|GO:0005524|GO:0006508
Bhi11g00104 812 PIRSF Lon_proteas 584 803 IPR004815 GO:0004176|GO:0005524|GO:0006508
Bhi11g00104 812 MobiDBLite consensus disorder prediction 1 25 - -
Bhi11g00104 812 Pfam ATPase family associated with various cellular activities (AAA) 330 467 IPR003959 GO:0005524|GO:0016887
Bhi11g00104 812 Pfam ATP-dependent protease La (LON) substrate-binding domain 28 180 IPR003111 -
Bhi11g00104 812 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 4 812 IPR027501 GO:0004252|GO:0006515
Bhi11g00104 812 Gene3D - 230 278 - -
Bhi11g00104 812 SUPERFAMILY Ribosomal protein S5 domain 2-like 620 799 IPR020568 -
Bhi11g00104 812 Gene3D - 291 469 IPR027417 -
Bhi11g00104 812 ProSiteProfiles Lon proteolytic domain profile. 617 802 IPR008269 GO:0004176|GO:0004252|GO:0006508
Bhi11g00104 812 SMART AAA_5 326 471 IPR003593 -
Bhi11g00104 812 ProSiteProfiles Lon N-terminal domain profile. 1 180 IPR003111 -
Bhi11g00104 812 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 705 713 IPR008268 GO:0004176|GO:0004252|GO:0006508
Bhi11g00104 812 Pfam Lon protease (S16) C-terminal proteolytic domain 594 801 IPR008269 GO:0004176|GO:0004252|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00104 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] - csv:101213865 1518.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g00103 Bhi-Chr11:2570476 Bhi11g00104 Bhi-Chr11:2571245 0 tandem
Bhi11g00104 Bhi-Chr11:2571245 Bhi11g00105 Bhi-Chr11:2571898 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g584 Blo02g01005 . . . Bpe05g00540 . . . Cmo06g00858 Cmo16g01139 . . . . . Cpe14g00900 . Bhi11g00104 . . . . Mch10g1616 . Cla10g00192 Cam10g0198 Cec10g0204 Cco10g0205 Clacu10g0202 Cmu10g1046 Cre10g0452 . . Cone6ag0622 Cone9ag0625 Lsi07g01235 . . Cme06g02505 . . . . . . Bma05g00397 . . . . Cma06g00835 Cma16g01089 . Car16g01031 . . . . . . . . . . . . . . . . . Csa03g00209 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008731 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g00104 Bhi_Chr11 FPKM 4.559182 4.855111 1.473627 1.538185 6.148711 8.002777 7.807132 0.552474 0.235474 0.432624