Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00108 CAGAATAGATCCTCGAAGAAAGGACAACCCGCAAGTCGCATATGGGAGTAGTAGCTGGTGAATTCTCGTCCTCAAGCTCCCCACGCCTTTATAAACCCGCATTTGCTCCGTCCTTCAAAGACCCATCTCCATTTTTCCCGGTTCTCAATACCCATTTCGAAGAAACACACAAATTCCCACACAGGAAACAAGCTTTCGTATCTCTCAATCGATCTCTGCCGACGATGACGGCTTCAAAAGATGAGAATTCAGTCGACAGCAAAAACCCTCTTGCCACGCTTGCTCCTGTGGAAGCAGTTCTATTCGATGTAGATGGAACTTTGTGTGATTCAGATCCGCTCCATTACTATGCCTTCCGCGAAATGCTTCAAGAGATTGGTTTCAATGGTGGGGTTCCAATTGATGAGGAGTTTTTCATTAAAAATATTGCCGGCAAGCATAACGATGATATTGCCCGAGCGTTATTCCCTGATGAACCTGAACGAGGTTTGAAATTTTGCGATGAGAAGGAGGCTATGTTTAGGAGATTGGTTACGGAACAATTAAAGCCTGTGAATGGCTTGTATAAAGTGAAGAAATGGATAGAAGATCGCGGATTGAAACGTGCTGCAGTTACAAATGCCCCTCGGCCGAATGCCGAGCTCATGATCTCCATGCTTGGTCTTACGGATTTTTTTGAAGCTATTATTATAGGCGGTGAATGTGAACATGCCAAACCACATCCAGAACCATATTTAAAGGCTCTGGAAGTACTCAAAGTGTCAAAGGATCACACTTTCATTTTTGAGGATTCTGTATCAGGGATCAAAGCTGGAGTGGCAGCCGGGATGCCTGTCGTCGGTATAACAACGAGAAATCCCGAGCACTTGTTGATGCAAGCAAAGCCTGCCCTCCTCGTAAAGGACTATGCCGATCCGAAATTGTGGGCAGCTTTGGACGAACTCGATAAGAGAGGAGGTACCATTAAGAATGCATGATCATCAACGTATCGTGTTGGTGAAATGGCTATCAATTCATTGTTACTCTCTATATAATACTTTGAATAACTTAGCTGTAGAAATAAACTTGTTATTCTTCAGCTTTGGGTCTTAATACCAATCCTCCTATTACAGTCAAAATAGGATGGTTAAATAGGTTAGGAAAGATCATTGGAAGGCCTGTCATATATACAAGATTTACCAATTTCAGTTTTATTTTCTTTCAATGATATACTACACGTTGCTTTC 1226 42.58 MGVVAGEFSSSSSPRLYKPAFAPSFKDPSPFFPVLNTHFEETHKFPHRKQAFVSLNRSLPTMTASKDENSVDSKNPLATLAPVEAVLFDVDGTLCDSDPLHYYAFREMLQEIGFNGGVPIDEEFFIKNIAGKHNDDIARALFPDEPERGLKFCDEKEAMFRRLVTEQLKPVNGLYKVKKWIEDRGLKRAAVTNAPRPNAELMISMLGLTDFFEAIIIGGECEHAKPHPEPYLKALEVLKVSKDHTFIFEDSVSGIKAGVAAGMPVVGITTRNPEHLLMQAKPALLVKDYADPKLWAALDELDKRGGTIKNA 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2608259 2611448 - XM_039047429.1 Bhi11g00108 48820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00108 311 CDD HAD_BPGM-like 85 270 - -
Bhi11g00108 311 Pfam Haloacid dehalogenase-like hydrolase 86 267 IPR041492 -
Bhi11g00108 311 SUPERFAMILY HAD-like 79 301 IPR036412 -
Bhi11g00108 311 Gene3D Putative phosphatase; domain 2 98 166 IPR023198 -
Bhi11g00108 311 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 82 291 - -
Bhi11g00108 311 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 83 94 IPR006439 -
Bhi11g00108 311 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 181 194 IPR006439 -
Bhi11g00108 311 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 212 228 IPR006439 -
Bhi11g00108 311 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 230 250 IPR006439 -
Bhi11g00108 311 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 82 291 - -
Bhi11g00108 311 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN-CONTAINING PROTEIN SGPP 62 307 - -
Bhi11g00108 311 Gene3D - 84 291 IPR023214 -
Bhi11g00108 311 PANTHER 6-PHOSPHOGLUCONATE PHOSPHATASE 62 307 - -
Bhi11g00108 311 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 189 268 IPR006439 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00108 - - - bhj:120089975 631.713
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01176 Bhi-Chr3:23933394 Bhi11g00108 Bhi-Chr11:2608259 1.13E-09 dispersed
Bhi11g00108 Bhi-Chr11:2608259 Bhi12g02551 Bhi-Chr12:79048880 6.19E-104 dispersed
Bhi11g00108 Bhi-Chr11:2608259 Bhi11g00109 Bhi-Chr11:2616801 1.49E-59 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g622 . Blo03g00108 . . . Bpe07g00230 . . Cmo06g00860 . . . . . Sed07g1320 . . Bhi11g00108 Tan01g2131 Cmetu06g0814 . . . . . . . . . . . . . . . Lsi07g01233 . . Cme06g02502 . . . . . . . Bma12g00230 . . . Cma06g00838 . . . . . . . . . . . . . . . . . . . . Csa03g00207 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002057 0 2 1 2 1 2 3 2 2 2 2 2 3 3 3 3 2 3 2 2 3 2 2 3 2 3 1 2 3 3 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g00108 Bhi_Chr11 FPKM 24.790339 27.001167 21.759617 21.233576 20.639618 20.298092 21.632988 23.747667 20.44006 21.836823