Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00196 AATTCTCTTTGTTAGACCCCAATCCTTCCAAATAGCGAATCGCTCTGTTAGCTCTCTGGATTTCAAGCTTTTCAAAAATCTCCATTAATGGCTTCTTCGATTGCTCTCCGAGGGCTTGCCGCTTCCTCCGCCGCTAAGCTTTTCAATTCTGTTCGCTCCGCCTCTGTTCTCCCCTCCTTTGTCGGTCGTTCATTCAACACCAATGCTCAGATGACCAACTATGCTGATGACGACCGCTCCGTCGATGTGGATCGCCGCTCTGACCGCTCTCTCTCTCGTTCTCGTGATCGCTTCCCTGGTTTCGCAGGTAATGTGTTCGATCCGTTTTCTCCGACTAGGAGCCTAAGTCAGGTGCTGAATCTGATGGATCAGTTCATGGAGGATCCGTTTCTGGCAGCTTCACGAGGAGTAGGAGCAGGATCAAGGAGGGGCTGGGACGTGAGGGAGGATGAAAATGGTCTGTACCTACGAATGGACATGCCTGGACTGAGCAAAGATGATGTGAAGGTGAGTGTGGAGCAGAACACACTGATCATCAAAGGCGAGGCAGGGAAAGAATCCGAAGACGAGGAGGATCGTAGACGATTCTCGAGCCGACTTGATTTGCTTGCAAATCTGTACGAACTGAATTCGATCAAAGCAGAGATGAAAAATGGAGTTCTGAAAGTGGCTGTGCCAAAGGTGAAGGAAGAAGAAAGGAAGGATGTGAGGCATGTTACTGTTGAGTAGTTGGGTCTCTCAAATCTGAAAAATGGTGAATAGCTTTCCCTCTGTTCTTTTTCTTATACTTTTAGAATGTAGAGCAAGGCATGTTACTGTTGAGTAGTTGGGTCTCTCAAATCTGAAAAATGGTGAATAGCTTTCCCTCTGTTCTTTTTCTTATACTTTTAGAATGTAGAGCAAGGCATGTTACTGTTGAGTAGTTGGGTCTCTCAAATCTGAAAAATGGTGAATAGCTTTCCCTCTGTTCTTTTTCTTATACTTTTAGAATGTAGAGCCTTCTTCTTTCTCTTGCTTTGCTAGGTGTTTGTTCTGGGGCTTTGGCTTCTAGTGTTTCTGGTTCTTGACATGTTGAATAAGATGCAAGGAATTTCAAAGATGTTTTGATAATTTCATGGAAGTAGGTTGGAGGTTTGAGGAAGTATTTTGTGATGAAAACTTTGAGGAGTTCCGTTGTTATGCTGCTGATTAAATATCATATAATACACCTATTGTAGAGCTACAAAATAGGTTTTGTTGATTCATAAATAGCTAATTCATTTGCTACTAATAATTTTAGTCAGAATACAAGTAGTAGTCTAGACATGCACTTGTGGAGGAGGTTGCCCTACATTGAGTAGGCCTTAGTTTAAACATATACATTTTCTGATATGGTTTCCTGTGTAATAAAAACTATGCTTTACTGA 1406 42.46 MASSIALRGLAASSAAKLFNSVRSASVLPSFVGRSFNTNAQMTNYADDDRSVDVDRRSDRSLSRSRDRFPGFAGNVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVREDENGLYLRMDMPGLSKDDVKVSVEQNTLIIKGEAGKESEDEEDRRRFSSRLDLLANLYELNSIKAEMKNGVLKVAVPKVKEEERKDVRHVTVE 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4212070 4214342 + XM_039050204.1 Bhi11g00196 48908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00196 213 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 107 213 IPR002068 -
Bhi11g00196 213 SUPERFAMILY HSP20-like chaperones 83 206 IPR008978 -
Bhi11g00196 213 PANTHER HEAT SHOCK 22 KDA PROTEIN, MITOCHONDRIAL-LIKE 1 213 - -
Bhi11g00196 213 MobiDBLite consensus disorder prediction 47 66 - -
Bhi11g00196 213 CDD ACD_sHsps-like 117 198 - -
Bhi11g00196 213 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 213 IPR044656 -
Bhi11g00196 213 Pfam Hsp20/alpha crystallin family 117 212 IPR002068 -
Bhi11g00196 213 MobiDBLite consensus disorder prediction 48 66 - -
Bhi11g00196 213 Gene3D - 73 212 IPR008978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00196 K13993 HSP20; HSP20 family protein - csv:101219106 327.791
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g00194 Bhi-Chr11:4196326 Bhi11g00196 Bhi-Chr11:4212070 1.70E-147 dispersed
Bhi11g00196 Bhi-Chr11:4212070 Bhi12g00695 Bhi-Chr12:20342756 7.48E-20 dispersed
Bhi11g00195 Bhi-Chr11:4196326 Bhi11g00196 Bhi-Chr11:4212070 4.50E-144 tandem
Bhi11g00196 Bhi-Chr11:4212070 Bhi11g00197 Bhi-Chr11:4212073 5.40E-151 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g533 . . . Bda08g00575 . . . . Cmo06g00800 Cmo16g01193 . . . . Sed04g1717 . . Bhi11g00196 Tan01g2027 Cmetu06g0652 . . . . . . . . . . . . . . . Lsi07g01303 . . Cme06g02574 . . . . . . . . . . . Cma06g00780 . Car06g00694 . Cpe08g00743 . . . . . . . . . . . . . . . . Csa03g00277 Chy06g02045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002899 1 4 2 2 1 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 1 1 1 1 1 2 1 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g00196 Bhi_Chr11 FPKM 34.037235 32.770138 38.237793 44.053135 27.832666 23.138948 23.608936 60.143581 66.793449 68.477394