Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00213 TCTAAGTTATTTTAAATAATACCTTTGCCTTTGTAAGCAAAAAATACTACACTTTCACTTCAGTTCTTCATTTCATCTCTCTCTCTCTCTCTCTCTCTTTCTCATGGCAAATCCCTCTCAGTTTCAGAGCTTTTGAAAGTGTTTCAATGGAGAACAGGACTGATGAATACGCCTATATAATGTTCAACAATTGAAGAAAACGAAGAAGAACTCAAATGCGGGTTAAGGAGATGCACCCACTCTGTTGCATCACTCTGGAGAATTTCAGCGGCGGAATCGGCGACCAGTCGCCGGAGGAAGCCACATCGTTGTCCCGGAGTAGAAGTTTGCCGGTGAGCCTTCTGGCATTTTCGAATAATAATAACACTCTGCAGATTTCTGGATCTATAACTAGGGTAGCTGGTGTTCTTTACAAATGGACTAATTACGGGAAAGGATGGAGATCGAGATGGTTCGTGTTAAGAGATGGTGTTTTGTCTTACTCCAAAATTAATCTTCTATCTCCCGATGATGATGTTCGATTGATCGGAGAGATTTCGACGAATCGGCTTTCGAGAAGGAAGCGACAGAAAACTGGGGGAATAGTTCATTTGAAGGTATCACGGTTCCGAGAAAGCAAGTCAGATGACCGGCGGTTTTATATATTCACTGCCACAAAGACACTTCATCTGAGAGCAGAATCAAAGAAAGACAGGGTGACCTGGATACAAGCTTTAGCCTCTTCCCGAAGCTTATTTCCATTGCAAATTGTGAACGATAATCTTCCCTTTGTACCCAATGATTTATCCCTTTCCACTCAGAAACTCAAGAAGCGTTTACTTGAAGAGGGAATCAGTGATGCAGTTGTTAAGGACTGCGAACAAATCATCCTCTCCGAGTTCTCAGAATTGCAGGGACAGCTGAAAGTACTTTTGGAAGAAAGATCTTGTTTGATTGATACCTTGAGAGAATTGGAGGCAGCTAATATTGAAATAGAAGCTAATGGAGTTCACAATGGTGAGTACCAGTTGATGAAACATGATTTTTCCACCGAATGCAGTGGAAAATATAGTGAATGTACTACTACAGAGTCTTCAGATGACGTTGAAAAACAAGATCTTGAAGATGGGTCAGATGCTGATGAAAGTTTCTTCTATGACACAACCGAAACATTTTCAGAACTCACTCTTAGCTGTGGGTCAGTAGAAGGGGCTTCTAATTCCTTAGATAAGGTTAAGGATCTTGAAAGTCAAAAGGATGATGTAGAGAAGATGCACGACAAACAGAGAATTGAAAGTTCTGTTCATTTTAATGTTCAGAGAAGAAAAAAGCTCCCAGATCCCGTGGAGAAAGAGAAACGAGTTAGTCTTTGGTCTATGATAAAGGACAATGTTGGAAAGGATCTTACACGAGTTTGTCTCCCAGTTTATTTTAATGAGCCCATATCATCCCTTCAGAAATGTTGTGAGGACATGGAATATTCTCATCTTTTAGACCAAGCATATGAATATGGAAGACAGGGGAACAATTTCCTCAGGGTCCTCAAGGTTGCTGCATTTGCCGTTTCTGGTTATGCTTCCTCTGAAGGACGACATTGTAAACCATTCAACCCTTTGCTTGGGGAAACTTATGAAGCTGACTTTCCTGAGAAAGGGATTCGTTTCTTCTCCGAGAAGGTAAGTCATCACCCGACCGTCATTGCGTGCCATTGTGAAGGCAGAGGATGGAGATTCTGGGGTGACAGCAACCTGCGATCAAAATTTTGGGGACGTTCAATTCAGCTTGACCCTGTTGGAGTTCTTAACTTGGAATTTGATGATGGAGAAATATTTCAGTGGAGCAAGGTCACCACAAATATTTATAATCTCATTCTCGGAAAAGTATATTGTGATCATCATGGTACGATGCACATACGTGGTAATAGAGAATATTCTTGCACACTTAAGTTCAAAGAGCCTTCAATTTTAGATCGAAATCCTCATCAGGTTCATGGATTTATCGAAGATGCTAATGGTCGAAAGGTTGCCACAATATTTGGCAAGTGGGATGAAGGTATGTATTACGTGGAAGGTGAGAGCAATGGGAACCCAAAGCGCAATGCCCCTCCAAGTGATGAATTGATGCTGTGGAAGAGCGAAAAACCTGCTCCTGATCTCACTCGTTACAATTTAACTTCATTTGCCATCACTCTTAACGAACTGACATTGGACCTGAAGGAAAGGCTTCCACCCACGGATTCAAGACTTAGACCAGACCAGCGACATTTGGAAAATGGTGAATATGAAAAGGCAAATGAAGAGAAACAACGCTTGGAGAGACGACAGCGAATTTCCAGGAAGTTGCAAGACAATGGTTGGAAACCCAGATGGTTTTATAGAGAAGGTGAAGATGGGCCATACCGATACATGGGTGGCTACTGGGAAGCACGAGATGAAGGAAAGTGGGATGGTTGCCCAGATGTATTTGGCGAATTGAACGAGAGCATGGTAGGCGAATTGGGATCATGATTTTAGTCAGATAATGCAGGAATAGCTCGAAAGTGTTGTCGAATCAGCAACGAATACGAGTAGCCTGGCCTTCTTCAACTTAATTCTTTTCACTATACTTCTTCTCAAAGGTTAATAAGAACTGGTGATTCTTTGAGCACTTAAGTAAAGAATTCTTCCTCAGCTATACAGTGGTTTAGGATAAAATCTTATGCACCATTTTCATGGTCATCCTTCTCTCTCTCTCTCTCTCTAGCTTGCTTCTTGTTGAGCAATTGTTTAGTATTCTGATGTTTAGATGAGAAGAGGGAAAAAAAGATGTAATTTTGCTCTCAATCCATTATGTAAGCTCTTCTGTTCAGCTGAATATACACATTCCATATATATATATATATTTAATAAATTTTTTCCTGCTGCATTGAGCAA 2891 40.92 MRVKEMHPLCCITLENFSGGIGDQSPEEATSLSRSRSLPVSLLAFSNNNNTLQISGSITRVAGVLYKWTNYGKGWRSRWFVLRDGVLSYSKINLLSPDDDVRLIGEISTNRLSRRKRQKTGGIVHLKVSRFRESKSDDRRFYIFTATKTLHLRAESKKDRVTWIQALASSRSLFPLQIVNDNLPFVPNDLSLSTQKLKKRLLEEGISDAVVKDCEQIILSEFSELQGQLKVLLEERSCLIDTLRELEAANIEIEANGVHNGEYQLMKHDFSTECSGKYSECTTTESSDDVEKQDLEDGSDADESFFYDTTETFSELTLSCGSVEGASNSLDKVKDLESQKDDVEKMHDKQRIESSVHFNVQRRKKLPDPVEKEKRVSLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCCEDMEYSHLLDQAYEYGRQGNNFLRVLKVAAFAVSGYASSEGRHCKPFNPLLGETYEADFPEKGIRFFSEKVSHHPTVIACHCEGRGWRFWGDSNLRSKFWGRSIQLDPVGVLNLEFDDGEIFQWSKVTTNIYNLILGKVYCDHHGTMHIRGNREYSCTLKFKEPSILDRNPHQVHGFIEDANGRKVATIFGKWDEGMYYVEGESNGNPKRNAPPSDELMLWKSEKPAPDLTRYNLTSFAITLNELTLDLKERLPPTDSRLRPDQRHLENGEYEKANEEKQRLERRQRISRKLQDNGWKPRWFYREGEDGPYRYMGGYWEARDEGKWDGCPDVFGELNESMVGELGS 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5051206 5059961 - XM_039049343.1 Bhi11g00213 48925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00213 756 Coils Coil 326 353 - -
Bhi11g00213 756 SMART PH_update 59 174 IPR001849 -
Bhi11g00213 756 Gene3D - 57 173 IPR011993 -
Bhi11g00213 756 Pfam Oxysterol-binding protein 377 731 IPR000648 GO:0008289
Bhi11g00213 756 MobiDBLite consensus disorder prediction 281 301 - -
Bhi11g00213 756 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 4 748 - -
Bhi11g00213 756 Pfam Pleckstrin homology domain 63 168 - -
Bhi11g00213 756 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 4 748 IPR000648 GO:0008289
Bhi11g00213 756 Coils Coil 675 705 - -
Bhi11g00213 756 Gene3D - 674 733 - -
Bhi11g00213 756 Gene3D - 463 628 - -
Bhi11g00213 756 SUPERFAMILY PH domain-like 61 168 - -
Bhi11g00213 756 Coils Coil 229 249 - -
Bhi11g00213 756 SUPERFAMILY Oxysterol-binding protein-like 372 749 IPR037239 -
Bhi11g00213 756 ProSiteProfiles PH domain profile. 58 172 IPR001849 -
Bhi11g00213 756 MobiDBLite consensus disorder prediction 663 692 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00213 K20456 OSBP; oxysterol-binding protein 1 - csv:101213703 1476.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi11g00213 Bhi12g00359 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g00211 Bhi-Chr11:5051206 Bhi11g00213 Bhi-Chr11:5051206 0 dispersed
Bhi11g00213 Bhi-Chr11:5051206 Bhi12g00422 Bhi-Chr12:13998866 0 dispersed
Bhi11g00212 Bhi-Chr11:5051206 Bhi11g00213 Bhi-Chr11:5051206 0 tandem
Bhi11g00213 Bhi-Chr11:5051206 Bhi11g00214 Bhi-Chr11:5051206 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g465 . . . . Bpe05g00608 Bpe07g00142 . . Cmo06g01155 . . Cma15g01175 . Car15g01063 Sed01g4010 . . Bhi11g00213 Tan01g2011 Cmetu09g1807 . . Mch10g1540 . . . . . . . . . . . . . Csa05g00361 Chy09g01146 . Blo03g00383 . Bda07g00512 . . Bpe11g00699 Bma05g00788 Bma12g00127 . . Cmo15g01236 Cma06g01130 . Car06g00967 . . Cpe13g00199 Bhi12g00359 . . Lac11g2192 Hepe06g1622 . Lcy12g1745 Cla01g00339 Cam01g0352 Cec01g0348 Cco01g0360 Clacu01g0356 Cmu01g0336 Cre09g2174 Lsi09g00365 . . Cme09g01678
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000881 4 7 4 5 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 4 2 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g00213 Bhi_Chr11 FPKM 4.684178 5.082263 4.39792 4.29828 10.020603 10.615974 10.917746 0.263256 0.431504 0.391533