Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00244 TTTTCGCGGTTTTCATCGCAAATTCATGGCGCTCCCCCATTTTCTTTCTAGGGTTTTAAATTTCTGTAACTGATACTCTCTCGTTTTCCCCCAATCTTCTTCTTCCTGTCGATTCCACATTCTCGGATTCAATTCCCATTTCTCCGATTGAATTTTCATCTTCTAAGAACGAACTAAGTTCTTCGTTGGGGACTTCGAGTTTCGTAACCATTTCTTGAAATGGCAGCGTCAATGGCGCCGTCTAAGCTGACGGAAGGAGCAGTGATGGTGATATGCAAGCGGGAATCGTCTGCAGAGACGTTTCAGCCGATTCTACAAGTAATTGACTTAAAACTGGTTAACACTTCGCAACAATCGGGCAGCGAGAGGTTCAGATTGTTGGTTTCTGATGGAACCCATTTCCAGCAAGGAATGCTGGGCACTCAGCTCAATGAACTGGTTAAGTCCGGGAAGTTACAGAAAGGTTCCATCGTTCGACTGCGGCAGTATGTTTGTAACCCCGTTCAAGAACGCCTGATTATAATTGTCATTGAGTTGGATGTGATAGAGGAAATGTGTGGAATTATTGGTGAGCCCGTATCAGCAACAAAATCGGCAACAGGTGCATTTATTGGAAACTCCCTATCATCTGGGGGGGCCCTGGGGGCTTCACCTGGCAGTGGAATGATTGGTAAGGTGAATGTATCTAGTGCATCTCTTGAACAGCCTAAAGTGAATCAATCACATGTACCGCATATGGGATCTTATTCTAACCCTCCTGAGACCGGAAGATTCTCTGCATCAGTTGTGCCTCCTCCTTATCCTAAGACAGATCCTGGAACAAGGTTTAACGGGCCATCTCCTTTAACTGGATCATATGGTAATCAGAAGATGGCATATCACAACAGTGGATCAGATATTCCCAGGCCACCTCTAAATTCTTATCCCTGTCCTCAGCCAACATATCAACAGCCACCTTCATTGTACAGTAACAGAGGACCAGTGGCGAAAAATGAAGCTGCCCCAAGGATAATGCCTATTTCTGCTCTGAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCAAAAGGAGAACTCAGACACTACAATAATCCTCGTGGTGATGGGAAAGTGTTTTCATTTGATTTACTTGATGCATACCGTGGAGAAATACGTGTAACATGCTTCAATACAGTAGCTGACCAGTTTTACAACCAGATTGAATCTGGTAAAGTCTACTTCATTTCTAAAGGAAGCTTGAAACCTGCTCAAAAGAACTATAACCATCTCAAATATGACTACGAAATAGTTCTTGAAAACACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCGCAGCAGCAGTTTCATTTCCATCAGATTAGTGAGATTGAGGGCATGGACAGCAACAGTGTTGTTGATGTAATTGGTGTTGTTTCTTCCATTAATCCTGCAACTTCTCTAATGAGAAAAAATGGTACTGAGACTCAGAAGAGATCCCTTCAGTTGAAAGATATGTCTGGCCGAAGTGTTGAATTGACTCTTTGGGGAAACTTCTGTCAAGCGGAAGGGCAAAGATTGCAAAATATGTGTGACTCGGGGTTGTTTCCAGTTTTGGCTGTGAAATCTAGTAGAGTAAGCGACTTCAATGGGAAGGCAGTGGGAACCATTTCAACAAGTCAGCTTTTTGTAGAGCCAGATTTCCCTGAGGCTCGTACGCTGAGAGAGTGGTTTGAGAAGGAAGGGAGGAGTACTCCTTCTGTCTCTTTATCCAGGGAAGTTGCCAGTGTGGGCAGAACAGATGCCCGTAAGACCATATCTCAAATTAAAGATGAGAGGTTAGGAACCTCTGAAAAGCCAGATTGGATCACGGTTAGTGCAACTGTTTCATTTATTAAGGTTGACAATTTCTGTTACACAGCATGTCCTATAATGATTGGGGACCGACAATGTAGCAAAAAGGTTACAAATAATGGAGATGGAAAATGGAGATGTGACAGGTGTGATGAGTCTGTTGACGAATGTGACTACAGGTACATACTGCAGCTGCAAATACAGGATCATACTGGCTTGACTTGGGTAACTGCATTTCAAGAAGGTGGTGAGGAGATCATGGGCATACCTGCAAAAAGATTGTATTATTTGAAATACGAAGAGCAAGATGATGAGAAATTTGCAGAAATCATCCGTAAGGTTCTTTTTACAAAATTTATAATGAAGTTGAAAATAAAGGAAGAGACTTTTAGCGATGAACAGAGAGTAAGATCAACAGTGGTGAAAGCAGAAAGCATTAATTTTTCGATGGAGTCCAGGTTTCTTCTAGATTTGATGGAAAAACACAGAGCAGAGAACAATAGTTCTGTTACCCCAAAGGCAGAAAGCGCCATACACAATCTTGGATTTCATGACCCTGCATCTGTGAATATTGGTGGTGGACAGTTCGTGTCACCTATTCGAAATATTACCAATGTCGGCAGAGAATATGGTACACCCAACCAAGGTATTCAGTATGGGAACCAGTACAGCAGCTCTAGGCCTTCTCAATCCACACCACTTAACTCGAGCACATACTGCAACAGCTGTGGAGGCTCTGGCCACAGCTCAATGAACTGCCCGAGTATCATGAGCGGTCCTGTGCTCTCTGTTGGAGGGGGGATGTACTCAAGTCGATCTTCTGGCCCTTCTGGTGGTGCCTCTGGTGAATGCTTCAAATGCCATCAAACTGGGCATTGGGCTAGGGATTGCCCTGGTTTGGCCACTGTCCCTCCAGCTTACGGTAACAGTGGCTTCACGGCTAGATAATGCTCAGGGAAGTTCCTAAATTCTTTGAATCCCTAGTTTCATTTTTTTCACTTTCATTAGAAAAGATGTTGCAGGAGTAGCGCCGAGGTGGAAAGCGTGGACTTAGCTAGCTTTTTGGGGCCTGAGTTCCTGAAATTTTCTTGTACAGCTTTTGCTTGGAAATTATGTTTTGCATCTTAGTCTATTTGTAATCATAGTTTGGAGTCTACTTACCTTTGTAGTAATTTTCCTTTGATGGCTGCGTTTATATTTTGCTAAGTTAATGTATCTTTGTACAGTGTTTTAGTTTTCTTTTGCACGTATTTTTTCTCAAGTTTCTCTATGGTATATAGTGTAGTTGGTCTATTGATCAAATAAATAGTTTGTGAAAGTTTTTTGTTTA 3181 42.6 MAASMAPSKLTEGAVMVICKRESSAETFQPILQVIDLKLVNTSQQSGSERFRLLVSDGTHFQQGMLGTQLNELVKSGKLQKGSIVRLRQYVCNPVQERLIIIVIELDVIEEMCGIIGEPVSATKSATGAFIGNSLSSGGALGASPGSGMIGKVNVSSASLEQPKVNQSHVPHMGSYSNPPETGRFSASVVPPPYPKTDPGTRFNGPSPLTGSYGNQKMAYHNSGSDIPRPPLNSYPCPQPTYQQPPSLYSNRGPVAKNEAAPRIMPISALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNTVADQFYNQIESGKVYFISKGSLKPAQKNYNHLKYDYEIVLENTSTIQPCFEDDQSIPQQQFHFHQISEIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSSRVSDFNGKAVGTISTSQLFVEPDFPEARTLREWFEKEGRSTPSVSLSREVASVGRTDARKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDESVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKAESINFSMESRFLLDLMEKHRAENNSSVTPKAESAIHNLGFHDPASVNIGGGQFVSPIRNITNVGREYGTPNQGIQYGNQYSSSRPSQSTPLNSSTYCNSCGGSGHSSMNCPSIMSGPVLSVGGGMYSSRSSGPSGGASGECFKCHQTGHWARDCPGLATVPPAYGNSGFTAR 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5812085 5816446 + XM_039048021.1 Bhi11g00244 48956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00244 859 Pfam OB-fold nucleic acid binding domain 277 362 IPR004365 GO:0003676
Bhi11g00244 859 ProSiteProfiles Zinc finger CCHC-type profile. 784 799 IPR001878 GO:0003676|GO:0008270
Bhi11g00244 859 SUPERFAMILY Retrovirus zinc finger-like domains 808 846 IPR036875 GO:0003676|GO:0008270
Bhi11g00244 859 CDD RPA1N 13 109 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bhi11g00244 859 Gene3D - 376 514 IPR012340 -
Bhi11g00244 859 SUPERFAMILY Nucleic acid-binding proteins 382 510 IPR012340 -
Bhi11g00244 859 Gene3D - 263 372 IPR012340 -
Bhi11g00244 859 CDD RPA1_DBD_C 532 705 IPR013955 -
Bhi11g00244 859 SUPERFAMILY Nucleic acid-binding proteins 263 376 IPR012340 -
Bhi11g00244 859 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 250 705 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bhi11g00244 859 SUPERFAMILY Nucleic acid-binding proteins 8 117 IPR012340 -
Bhi11g00244 859 SUPERFAMILY Nucleic acid-binding proteins 529 706 IPR012340 -
Bhi11g00244 859 PANTHER REPLICATION PROTEIN A SUBUNIT 6 741 - -
Bhi11g00244 859 MobiDBLite consensus disorder prediction 161 229 - -
Bhi11g00244 859 Pfam Replication factor-A protein 1, N-terminal domain 10 110 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bhi11g00244 859 Pfam Zinc knuckle 827 842 IPR001878 GO:0003676|GO:0008270
Bhi11g00244 859 ProSiteProfiles Zinc finger CCHC-type profile. 828 842 IPR001878 GO:0003676|GO:0008270
Bhi11g00244 859 MobiDBLite consensus disorder prediction 752 776 - -
Bhi11g00244 859 MobiDBLite consensus disorder prediction 203 222 - -
Bhi11g00244 859 CDD RPA1_DBD_B 398 505 - -
Bhi11g00244 859 Pfam Replication factor-A C terminal domain 548 699 IPR013955 -
Bhi11g00244 859 CDD RPA1_DBD_A 266 369 - -
Bhi11g00244 859 Gene3D - 779 846 - -
Bhi11g00244 859 PANTHER REPLICATION FACTOR A 1, RFA1 6 741 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bhi11g00244 859 MobiDBLite consensus disorder prediction 161 184 - -
Bhi11g00244 859 SMART c2hcfinal6 783 799 IPR001878 GO:0003676|GO:0008270
Bhi11g00244 859 SMART c2hcfinal6 827 843 IPR001878 GO:0003676|GO:0008270
Bhi11g00244 859 Pfam Replication protein A OB domain 387 490 IPR031657 -
Bhi11g00244 859 Gene3D - 515 706 IPR012340 -
Bhi11g00244 859 Gene3D - 8 123 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi06g01595 Bhi-Chr6:46364185 Bhi11g00244 Bhi-Chr11:5812085 0 dispersed
Bhi06g01596 Bhi-Chr6:46364185 Bhi11g00244 Bhi-Chr11:5812085 0 dispersed
Bhi11g00244 Bhi-Chr11:5812085 Bhi11g00248 Bhi-Chr11:5859307 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00244 K07466 - csv:101211358 1570.06