Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00248 AACCATCTCAAAAATGACTACGAAATAGTTCTTGAAAACACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCGCAGCAGCAGTTTCATTTCCATCAGATTAGTGAGATTGAGGGCATGGACAGCAACAGTGTTGTTGATGTAATTGGTGTTGTTTCTTCCATTAATCCTGCAACTTCTCTAATGAGAAAAAATGGTACTGAGACTCAGAAGAGATCCCTTCAGTTGAAAGATATGTCTGGCCGAAGTGTTGAATTGACTCTTTGGGGAAACTTCTGTCAAGCGGAAGGGCAAAGATTGCAAAATATGTGTGACTCGGGGTTGTTTCCAGTTTTGGCTGTGAAATCTAGTAGAGTAAGCGACTTCAATGGGAAGGCAGTGGGAACCATTTCAACAAGTCAGCTTTTTGTAGAGCCAGATTTCCCTGAGGCTCGTACGCTGAGAGAGTGGTTTGAGAAGGAAGGGAGGAGTACTCCTTCTGTCTCTTTATCCAGGGAAGTTGCCAGTGTGGGCAGAACAGATGCCCGTAAGACCATATCTCAAATTAAAGATGAGAGGTTAGGAACCTCTGAAAAGCCAGATTGGATCACGGTTAGTGCAACTGTTTCATTTATTAAGGTTGACAATTTCTGTTACACAGCATGTCCTATAATGATTGGGGACCGACAATGTAGCAAAAAGGTTACAAATAATGGAGATGGAAAATGGAGATGTGACAGGTGTGATGAGTCTGTTGACGAATGTGACTACAGGTACATACTGCAGCTGCAAATACAGGATCATACTGGCTTGACTTGGGTAACTGCATTTCAAGAAGGTGGTGAGGAGATCATGGGCATACCTGCAAAAAGATTGTATTATTTGAAATACGAAGAGCAAGATGATGAGAAATTTGCAGAAATCATCCGTAAGGTTCTTTTTACAAAATTTATAATGAAGTTGAAAATAAAGGAAGAGACTTTTAGCGATGAACAGAGAGTAAGATCAACAGTGGTGAAAGCAGAAAGCATTAATTTTTCGATGGAGTCCAGGTTTCTTCTAGATTTGATGGAAAAACACAGAGCAGAGAACAATAGTTCTGTTACCCCAAAGGCAGAAAGCGCCATACACAATCTTGGATTTCATGACCCTGCATCTGTGAATATTGGTGGTGGACAGTTCGTGTCACCTATTCGAAATATTACCAATGTCGGCAGAGAATATGGTACACCCAACCAAGGTATTCAGTATGGGAACCAGTACAGCAGCTCTAGGCCTTCTCAATCCACACCACTTAACTCGAGCACATACTGCAACAGCTGTGGAGGCTCTGGCCACAGCTCAATGAACTGCCCGAGTATCATGAGCGGTCCTGTGCTCTCTGTTGGAGGGGGGATGTACTCAAGTCGATCTTCTGGCCCTTCTGGTGGTGCCTCTGGTGAATGCTTCAAATGCCATCAAACTGGGCATTGGGCTAGGGATTGCCCTGGTTTGGCCACTGTCCCTCCAGCTTACGGTAACAGTGGCTTCACGGCTAGATAATGCTCAGGGAAGTTCCTAAATTCTTTGAATCCCTAGTTTCATTTTTTTCACTTTCATTAGAAAAGATGTTGCAGGAGTAGCGCCGAGGTGGAAAGCGTGGACTTAGCTAGCTTTTTGGGGCCTGAGTTCCTGAAATTTTCTTGTACAGCTTTTGCTTGGAAATTATGTTTTGCATCTTAGTCTATTTGTAATCATAGTTTGGAGTCTACTTACCTTTGTAGTAATTTTCCTTTGATGGCTGCGTTTATATTTTGCTAAGTTAATGTATCTTTGTACAGTGTTTTAGTTTTCTTTTGCACGTATTTTTTCTCAAGTTTCTCTATGGTATATAGTGTAGTTGGTCTATTGATCAAATAAATAGTTTGTGAAAGTTTTTTGTTTA 1912 41.63 NHLKNDYEIVLENTSTIQPCFEDDQSIPQQQFHFHQISEIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSSRVSDFNGKAVGTISTSQLFVEPDFPEARTLREWFEKEGRSTPSVSLSREVASVGRTDARKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDESVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKAESINFSMESRFLLDLMEKHRAENNSSVTPKAESAIHNLGFHDPASVNIGGGQFVSPIRNITNVGREYGTPNQGIQYGNQYSSSRPSQSTPLNSSTYCNSCGGSGHSSMNCPSIMSGPVLSVGGGMYSSRSSGPSGGASGECFKCHQTGHWARDCPGLATVPPAYGNSGFTAR 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5859307 5881268 - XM_039047835.1 Bhi11g00248 48960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00248 509 SUPERFAMILY Nucleic acid-binding proteins 179 356 IPR012340 -
Bhi11g00248 509 Pfam Replication protein A OB domain 37 140 IPR031657 -
Bhi11g00248 509 Gene3D - 165 356 IPR012340 -
Bhi11g00248 509 SUPERFAMILY Retrovirus zinc finger-like domains 458 496 IPR036875 GO:0003676|GO:0008270
Bhi11g00248 509 MobiDBLite consensus disorder prediction 402 426 - -
Bhi11g00248 509 Gene3D - 429 496 - -
Bhi11g00248 509 CDD RPA1_DBD_B 48 155 - -
Bhi11g00248 509 PANTHER REPLICATION PROTEIN A SUBUNIT 1 393 - -
Bhi11g00248 509 ProSiteProfiles Zinc finger CCHC-type profile. 478 492 IPR001878 GO:0003676|GO:0008270
Bhi11g00248 509 PANTHER REPLICATION FACTOR A 1, RFA1 1 393 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bhi11g00248 509 CDD RPA1_DBD_C 182 355 IPR013955 -
Bhi11g00248 509 Pfam Zinc knuckle 477 492 IPR001878 GO:0003676|GO:0008270
Bhi11g00248 509 Pfam Replication factor-A C terminal domain 198 349 IPR013955 -
Bhi11g00248 509 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 1 355 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bhi11g00248 509 SMART c2hcfinal6 433 449 IPR001878 GO:0003676|GO:0008270
Bhi11g00248 509 SMART c2hcfinal6 477 493 IPR001878 GO:0003676|GO:0008270
Bhi11g00248 509 SUPERFAMILY Nucleic acid-binding proteins 32 160 IPR012340 -
Bhi11g00248 509 ProSiteProfiles Zinc finger CCHC-type profile. 434 449 IPR001878 GO:0003676|GO:0008270
Bhi11g00248 509 Gene3D - 26 164 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g00244 Bhi-Chr11:5812085 Bhi11g00248 Bhi-Chr11:5859307 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00248 K07466 - bhj:120090268 1009.59