Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00264 AACAATTTGATTTTTGGGACAAGAAGACCATCAATCTCTGACACAAATGAAAAAACACCCTCCCCCTTCACTGTCAAAAGCTGCAGAATTTCCGACATCTTCTTTTTATCTCCGCCGTGATTCCACCGCCGACCGCCGTAACAGACAGCACAAACTTTCAGAATAACACGTCAACTTGTCAGAGGCTGACTGGGCCGACGAGTACCCTCAGGGTAAGACAGTGCCAGAGGAAACTCAGACACGTCAGCTCTCTTCCACCGATACTTCCGGTTGCCTTTCCCTGTAAAATTTTGAAGCAGAGAGATTATGATGGAGTGGGAAAAGCCTGAGCAGCAAAATCCTTACCATCATCAGAACCCTCCTCTTCGAGACGATCATCTCCATCACCTCACCGGAACTACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTACGCCACCATTTGTGAGCAGCTAGTTGAGATGCATAAGACCCTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAATATGTATTGTGAGCCATTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAACGATGGACTCCGACGCCTGTGCAACTTCAGATCTTAGAGCGTATATTTGAGCAAGGGAATGGAACTCCCAGCAAACAAAAGATCAAAGAGATAACCTCTGAACTGGGTCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCGAAGAGGAAGCAGCAAAGTACAGCACCCGCCTATGGTGAATCGGAAGTGGAGACAGAAGTCGAGTCACCAAAAGATAAGAAGACAAAACCTGTGGATTTTCAAACTCATCAATCCTCTGCATCTTTGGGGGACGACATGTGCTTCCAGAGTCCGGACATGAGTTCTGAACTGCATTTCCGGGATCCAAACACCAACAAAGCTGATACTTTGTTTCCTTCGAATGGAAGTTTAAAAACTGCGAGAAGTTTCAACCAGATGTCTTTTTATGAGGCAGGGAATGAGCAGTTGACAGGAAAGATTGAAACACCAGAGAACTATAGTATTTACCAGCAAGCAGAAGGCTACAGCATGACCGAACGACCATGAATTCTTATACAATTAACACAAGGTGTAGTTGTCTTATTACGAATATGCTGGACTTCTAGCTCTCATGTGACTGTGATTTAGTCTGATATTGAAGGAGACGGTGATGACGATGACGAATGATGCTGACTTGTGTGCTCGTATCTTGTCGTGGATTGTCGGAGTATTCAGTTTTGAGTAATGTATTTTGGTTGAATTGTGTTTGGAGATGAGCATTGGGAGTTTGATTGGTTGATTGAGCAATTCAAAGAGTCTTTTTGAGTTTGTTGAATGACCCCTTAAGAGGAGAGGATGTATGGTGTCCATTTGTACAAGAATGTGTTTGTATTAAAAAGGATGATTGCTAAAATGATGATCCTAATTGATAGGAGAATGGGCACAGCCTCTGACAACCTCATTCTCTTTCGTACTA 1555 44.18 MMEWEKPEQQNPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTAPAYGESEVETEVESPKDKKTKPVDFQTHQSSASLGDDMCFQSPDMSSELHFRDPNTNKADTLFPSNGSLKTARSFNQMSFYEAGNEQLTGKIETPENYSIYQQAEGYSMTERP 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6084567 6089169 + XM_039048785.1 Bhi11g00264 48976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00264 279 MobiDBLite consensus disorder prediction 158 191 - -
Bhi11g00264 279 CDD homeodomain 100 162 IPR001356 GO:0003677
Bhi11g00264 279 MobiDBLite consensus disorder prediction 1 26 - -
Bhi11g00264 279 Pfam Homeodomain 100 160 IPR001356 GO:0003677
Bhi11g00264 279 SUPERFAMILY Homeodomain-like 96 164 IPR009057 -
Bhi11g00264 279 ProSiteProfiles 'Homeobox' domain profile. 96 161 IPR001356 GO:0003677
Bhi11g00264 279 PANTHER - 2 276 - -
Bhi11g00264 279 Gene3D - 102 166 - -
Bhi11g00264 279 SMART HOX_1 98 165 IPR001356 GO:0003677
Bhi11g00264 279 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 276 IPR044559 GO:0003700
Bhi11g00264 279 MobiDBLite consensus disorder prediction 175 190 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00264 - - - csv:101203410 541.576
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi09g02871 Bhi-Chr9:75625226 Bhi11g00264 Bhi-Chr11:6084567 5.02E-92 dispersed
Bhi11g00264 Bhi-Chr11:6084567 Bhi11g00266 Bhi-Chr11:6084763 0 dispersed
Bhi11g00264 Bhi-Chr11:6084567 Bhi11g00265 Bhi-Chr11:6084569 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi08g01290 CCT,ECH 1 198 Wox Gene Family AT3G18010 54.3 5.2e-47 186.0
Bhi02g00135 CCT,ECH 1 165 Wox Gene Family AT3G18010 54.4 4.2e-41 166.4
Bhi11g02705 . 18 242 Wox Gene Family AT3G03660 52.6 5.5e-50 195.7
Bhi11g00265 . 1 275 Wox Gene Family AT4G35550 50.3 7.4e-70 261.5
Bhi11g00264 . 1 276 Wox Gene Family AT4G35550 50.2 9.7e-70 261.2
Bhi11g00266 . 1 276 Wox Gene Family AT4G35550 50.2 9.7e-70 261.2
Bhi09g02871 . 101 290 Wox Gene Family AT4G35550 57.4 1.1e-57 221.1
Bhi04g00375 . 5 168 Wox Gene Family AT1G46480 62.2 1.0e-49 194.1
Bhi03g00342 . 1 388 Wox Gene Family AT2G33880 50.1 2.5e-66 250.4
Bhi08g01290 CCT,ECH 1 198 Wox Gene Family AT3G18010 54.3 5.2e-47 186.0
Bhi02g00135 CCT,ECH 1 165 Wox Gene Family AT3G18010 54.4 4.2e-41 166.4
Bhi04g00375 . 5 168 Wox Gene Family AT1G46480 62.2 1.0e-49 194.1
Bhi03g00342 . 1 388 Wox Gene Family AT2G33880 50.1 2.5e-66 250.4
Bhi11g02705 . 18 242 Wox Gene Family AT3G03660 52.6 5.5e-50 195.7
Bhi11g00265 . 1 275 Wox Gene Family AT4G35550 50.3 7.4e-70 261.5
Bhi11g00264 . 1 276 Wox Gene Family AT4G35550 50.2 9.7e-70 261.2
Bhi11g00266 . 1 276 Wox Gene Family AT4G35550 50.2 9.7e-70 261.2
Bhi09g02871 . 101 290 Wox Gene Family AT4G35550 57.4 1.1e-57 221.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2296 PF00046 Homeodomain 8.90E-19 CL0123 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g00264 Bhi_Chr11 FPKM 0.237405 0.102365 13.92704 14.189318 16.922792 17.601048 14.65084 0.820014 0.208821 0.088004