Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00334 AAGCGTCCCCTCACAATTCCGAACCAAATAAAAGGCCATCGATGTTCCATAACCACTTGTGGAGGTCCAAGTTCTGATGGCGATTGCTCTCCTTCAAGGCGTGCAGCTCCTGCTCGAGAGAAAGTAGAAATAGACAACGTCGAATTCAAATTTCAGAACCACGTTGCTGAACGGACTATCCGATAGCAAAAAGAAGAGGAACGGTTACATGTAGGTGATCTTTTAGGGTTTCTTTCTTGGGTTGCATGTTCCTAAAATTACCACCAAAGATCAAAGCAGCAATTTCTATTTCCAGAGCTCGGTTTTCCAGGTATGAATCTCGAAGATTCTCCCTTTGGAACTGGAGATGTGTGACGCGATGGAGAAAGAGGAATCTGCACAAGATGTTTCAGTTGCATTAAGTGAAGGCGACCAAGTTAATGCAAAAGATGAGCTCCATGAATCTCTCTCTGTGCCAGCTGAGGCAACTCCAAACTCTTGTGAAAAAGGGTTTGGTTCACCTGAGACTCATGTACAGGAAGTAGATAAACCTACGATTCCTCAGCAATCAAATCAAAATTCTGCGCGCTCACTTCCCTTGGATCATGACCAAGAGTTGGACAAGCCTGATGCTGAACCTGCTTCTGATGTCAAGACTGGCCCTGATGAGATGCCCCCAAGGGAGCTAGATGCTGGTATTTCTAACTCTCCCCTAGAAACTGTTCAGTCCTCCATGGATGCCAAATCTGAGGCCGTTGATATGCCTGAAACTAAAACCGGTTCTCTTGATGATGCTTCAACAGCAAGTCCTGTAACTCCCCATCCAGTGTCATCTTGTGTTAAAGCTGAAACAGAGAATGCCATAGAATTGAAGGTCAATGAAGACAGTGTTACTACACCTCATAATGGGGATTCAAACATGAATCACTCGTTTATTTTTGATGAAAATCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAAAACTTCTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCTAAGTTTTATGGAGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCTGTTACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGGCAAGTAGGCGAGTCTTTCAAGCCCCCAAAGACATGCACAACTGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTATGAGAGGCATAAAACCAACGGTGGCGAACTCAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCAGCACGTGCCATGCAGGGTTGGCACTCGCAACGTCTTTTGGGAAATGGTGAAGTTAGTGACCCCATTATCAAGGATAAGAACTCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAAGCATTGGCTTTAAACGTAAGAAACCCGCTTACATGGAACATGCCATGAAATCAACACGTACAAAATCACCAAAACCACAGTTGGATGTAGCAGTAGTTGATATTGGACAACCAGCTGACTGGGTCAAGGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCCGGACTACTCCGTGAGGAGGTGCGTGTCCAGTCTGATCCAGCAGGACGCTTGGTCATTAGTGGTGAACCTGAACATCCTGATAATCCTTGGGGTGTCACACCCTTCAAAAAGGTGGTTAGCTTACCGTCAAGGATTGATCCACATCAGACTTCTGCCGTTGTCACCTTACATGGGCAGTTGTTTGTTCGTGTTCCATTCGAACAGTCGGAATGAAGTTGCTACATACTCCACTCGAATCTCAATGTTCAGACCGATCTTGTAGTTTGATATGTTAGTCTGTTTTATAATGTTAATAACAGTGGCATAAACCGTTTAGCTAGGCAGGAAATATGATTTTGTTTTGTAAGATCTTTGGTAGTGGTTAGCTGGCATCGAAGAGCTATTATTGTATCTTATGTGGAAGCCTCTTCTAATCTAAGGTAGTTAGTTCACAAATCTGCCGTCTAATTAGCCCCTTACTGCTTATTTATAGTATAAAGTTCATTTATTCTTCGCAA 2127 43.35 MCDAMEKEESAQDVSVALSEGDQVNAKDELHESLSVPAEATPNSCEKGFGSPETHVQEVDKPTIPQQSNQNSARSLPLDHDQELDKPDAEPASDVKTGPDEMPPRELDAGISNSPLETVQSSMDAKSEAVDMPETKTGSLDDASTASPVTPHPVSSCVKAETENAIELKVNEDSVTTPHNGDSNMNHSFIFDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELSVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSLSMQKREKQLKSIGFKRKKPAYMEHAMKSTRTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7681900 7691529 - XM_039048818.1 Bhi11g00334 49046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00334 498 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 398 498 IPR002068 -
Bhi11g00334 498 Pfam ARID/BRIGHT DNA binding domain 208 292 IPR001606 GO:0003677
Bhi11g00334 498 MobiDBLite consensus disorder prediction 303 320 - -
Bhi11g00334 498 SMART ARID_2 202 292 - -
Bhi11g00334 498 Gene3D - 394 498 IPR008978 -
Bhi11g00334 498 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 10 497 IPR045147 GO:0006357
Bhi11g00334 498 MobiDBLite consensus disorder prediction 78 103 - -
Bhi11g00334 498 SUPERFAMILY HSP20-like chaperones 409 494 IPR008978 -
Bhi11g00334 498 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 10 497 - -
Bhi11g00334 498 SUPERFAMILY ARID-like 199 306 IPR036431 GO:0003677
Bhi11g00334 498 SMART bright_3 206 297 IPR001606 GO:0003677
Bhi11g00334 498 MobiDBLite consensus disorder prediction 60 77 - -
Bhi11g00334 498 ProSiteProfiles ARID domain profile. 205 296 IPR001606 GO:0003677
Bhi11g00334 498 CDD ACD_sHsps_p23-like 417 493 - -
Bhi11g00334 498 MobiDBLite consensus disorder prediction 1 155 - -
Bhi11g00334 498 MobiDBLite consensus disorder prediction 138 152 - -
Bhi11g00334 498 Pfam Hsp20/alpha crystallin family 415 497 IPR002068 -
Bhi11g00334 498 MobiDBLite consensus disorder prediction 303 326 - -
Bhi11g00334 498 CDD ARID 210 292 - -
Bhi11g00334 498 Gene3D - 205 303 IPR036431 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00334 - - - bhj:120091028 986.867
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g00334 Bhi-Chr11:7681900 Bhi11g00337 Bhi-Chr11:7681900 0 dispersed
Bhi11g00334 Bhi-Chr11:7681900 Bhi11g00335 Bhi-Chr11:7681900 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi12g01502 . 103 456 ARID Transcription Factor Family AT1G04880 58.2 6.7e-108 388.7
Bhi11g00337 . 228 497 ARID Transcription Factor Family AT1G20910 61.0 1.2e-89 327.8
Bhi11g00335 . 226 495 ARID Transcription Factor Family AT1G20910 61.0 1.2e-89 327.8
Bhi11g00334 . 197 466 ARID Transcription Factor Family AT1G20910 61.0 1.2e-89 327.8
Bhi11g00336 . 192 461 ARID Transcription Factor Family AT1G20910 61.0 1.2e-89 327.8
Bhi09g02941 . 54 347 ARID Transcription Factor Family AT1G76110 68.2 2.2e-111 399.8
Bhi11g00337 . 207 527 ARID Transcription Factor Family AT1G76510 59.5 5.0e-108 389.0
Bhi11g00335 . 205 525 ARID Transcription Factor Family AT1G76510 59.5 5.0e-108 389.0
Bhi11g00334 . 176 496 ARID Transcription Factor Family AT1G76510 59.5 5.0e-108 389.0
Bhi11g00336 . 171 491 ARID Transcription Factor Family AT1G76510 59.5 5.0e-108 389.0
Bhi01g02835 CCT,ECH 1 773 ARID Transcription Factor Family AT3G43240 59.5 4.1e-267 918.3
Bhi01g02834 . 1 773 ARID Transcription Factor Family AT3G43240 59.5 4.1e-267 918.3
Bhi09g00270 . 2 767 ARID Transcription Factor Family AT3G43240 57.7 3.8e-257 885.2
Bhi09g00271 CCT,ECH 2 767 ARID Transcription Factor Family AT3G43240 57.7 3.8e-257 885.2
Bhi09g00272 . 2 767 ARID Transcription Factor Family AT3G43240 57.7 3.8e-257 885.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2299 PF00011 HSP20 5.50E-06 CL0190 Bhi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g00334 Bhi_Chr11 FPKM 15.782596 16.84483 31.418976 33.139259 13.92555 13.700635 14.947023 27.437567 26.631897 28.853365