Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00337 AAGCGTCCCCTCACAATTCCGAACCAAATAAAAGGCCATCGATGTTCCATAACCACTTGTGGAGGTCCAAGTTCTGATGGCGATTGCTCTCCTTCAAGGCGTGCAGCTCCTGCTCGAGAGAAAGTAGAAATAGACAACGTCGAATTCAAATTTCAGAACCACGTTGCTGAACGGACTATCCGATAGCAAAAAGAAGAGGAACGGTTACATGTAGGTGATCTTTTAGGGTTTCTTTCTTGGGTTGCATGTTCCTAAAATTACCACCAAAGATCAAAGCAGCAATTTCTATTTCCAGAGCTCGGTTTTCCAGTTGTAGGATTCTCCCTTTGGAACTGGAGATGTGTGACGCGATGGAGAAAGAGGAATCTGCACAAGATGTTTCAGTTGCATTAAGTGAAGGCGACCAAGTTAATGCAAAAGATGAGCTCCATGAATCTCTCTCTGTGCCAGCTGAGGCAACTCCAAACTCTTGTGAAAAAGGGTTTGGTTCACCTGAGACTCATGTACAGGAAGTAGATAAACCTACGATTCCTCAGCAATCAAATCAAAATTCTGCGCGCTCACTTCCCTTGGATCATGACCAAGAGTTGGACAAGCCTGATGCTGAACCTGCTTCTGATGTCAAGACTGGCCCTGATGAGATGCCCCCAAGGGAGCTAGATGCTGGTATTTCTAACTCTCCCCTAGAAACTGTTCAGTCCTCCATGGATGCCAAATCTGAGGCCGTTGATATGCCTGAAACTAAAACCGGTTCTCTTGATGATGCTTCAACAGCAAGTCCTGTAACTCCCCATCCAGTGTCATCTTGTGTTAAAGCTGAAACAGAGAATGCCATAGAATTGAAGGTCAATGAAGACAGTGTTACTACACCTCATAATGGGGATTCAAACATGAATCACTCGTTTATTTTTGATGAAAATCATATTGCTGAAGGTAGTGAATCAGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAAAACTTCTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCTAAGTTTTATGGAGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCTGTTACTAGATTGGGAGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGGCAAGTAGGCGAGTCTTTCAAGCCCCCAAAGACATGCACAACTGTTTCATGGACATTTCGAGGATTTTATGAGAAGGCTCTCCTTGATTATGAGAGGCATAAAACCAACGGTGGCGAACTCAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGATCAGGATCAGGTAGAGCACGAAGAGATGCTGCAGCACGTGCCATGCAGGGTTGGCACTCGCAACGTCTTTTGGGAAATGGTGAAGTTAGTGACCCCATTATCAAGGATAAGAACTCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAAGCATTGGCTTTAAACGTAAGAAACCCGCTTACATGGAACATGCCATGAAATCAACACGTACAAAATCACCAAAACCACAGTTGGATGTAGCAGTAGTTGATATTGGACAACCAGCTGACTGGGTCAAGGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCCGGACTACTCCGTGAGGAGGTGCGTGTCCAGTCTGATCCAGCAGGACGCTTGGTCATTAGTGGTGAACCTGAACATCCTGATAATCCTTGGGGTGTCACACCCTTCAAAAAGGTGGTTAGCTTACCGTCAAGGATTGATCCACATCAGACTTCTGCCGTTGTCACCTTACATGGGCAGTTGTTTGTTCGTGTTCCATTCGAACAGTCGGAATGAAGTTGCTACATACTCCACTCGAATCTCAATGTTCAGACCGATCTTGTAGTTTGATATGTTAGTCTGTTTTATAATGTTAATAACAGTGGCATAAACCGTTTAGCTAGGCAGGAAATATGATTTTGTTTTGTAAGATCTTTGGTAGTGGTTAGCTGGCATCGAAGAGCTATTATTGTATCTTATGTGGAAGCCTCTTCTAATCTAAGGTAGTTAGTTCACAAATCTGCCGTCTAATTAGCCCCTTACTGCTTATTTATAGTATAAAGTTCATTTATTCTTCGCAA 2119 43.37 MFLKLPPKIKAAISISRARFSSCRILPLELEMCDAMEKEESAQDVSVALSEGDQVNAKDELHESLSVPAEATPNSCEKGFGSPETHVQEVDKPTIPQQSNQNSARSLPLDHDQELDKPDAEPASDVKTGPDEMPPRELDAGISNSPLETVQSSMDAKSEAVDMPETKTGSLDDASTASPVTPHPVSSCVKAETENAIELKVNEDSVTTPHNGDSNMNHSFIFDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELSVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSLSMQKREKQLKSIGFKRKKPAYMEHAMKSTRTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7681900 7691529 - XM_039048816.1 Bhi11g00337 49049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00337 529 SMART bright_3 237 328 IPR001606 GO:0003677
Bhi11g00337 529 SUPERFAMILY ARID-like 230 337 IPR036431 GO:0003677
Bhi11g00337 529 MobiDBLite consensus disorder prediction 169 183 - -
Bhi11g00337 529 Pfam ARID/BRIGHT DNA binding domain 239 323 IPR001606 GO:0003677
Bhi11g00337 529 CDD ARID 241 323 - -
Bhi11g00337 529 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 39 528 - -
Bhi11g00337 529 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 429 529 IPR002068 -
Bhi11g00337 529 SMART ARID_2 233 323 - -
Bhi11g00337 529 Gene3D - 236 334 IPR036431 GO:0003677
Bhi11g00337 529 Gene3D - 425 529 IPR008978 -
Bhi11g00337 529 CDD ACD_sHsps-like 444 524 - -
Bhi11g00337 529 MobiDBLite consensus disorder prediction 109 134 - -
Bhi11g00337 529 MobiDBLite consensus disorder prediction 334 357 - -
Bhi11g00337 529 MobiDBLite consensus disorder prediction 334 351 - -
Bhi11g00337 529 MobiDBLite consensus disorder prediction 66 186 - -
Bhi11g00337 529 SUPERFAMILY HSP20-like chaperones 440 525 IPR008978 -
Bhi11g00337 529 MobiDBLite consensus disorder prediction 91 108 - -
Bhi11g00337 529 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 39 528 IPR045147 GO:0006357
Bhi11g00337 529 Pfam Hsp20/alpha crystallin family 446 528 IPR002068 -
Bhi11g00337 529 ProSiteProfiles ARID domain profile. 236 327 IPR001606 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00337 - - - bhj:120091028 1033.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g00334 Bhi-Chr11:7681900 Bhi11g00337 Bhi-Chr11:7681900 0 dispersed
Bhi11g00335 Bhi-Chr11:7681900 Bhi11g00337 Bhi-Chr11:7681900 0 dispersed
Bhi11g00336 Bhi-Chr11:7681900 Bhi11g00337 Bhi-Chr11:7681900 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi12g01502 . 103 456 ARID Transcription Factor Family AT1G04880 58.2 6.7e-108 388.7
Bhi11g00337 . 228 497 ARID Transcription Factor Family AT1G20910 61.0 1.2e-89 327.8
Bhi11g00335 . 226 495 ARID Transcription Factor Family AT1G20910 61.0 1.2e-89 327.8
Bhi11g00334 . 197 466 ARID Transcription Factor Family AT1G20910 61.0 1.2e-89 327.8
Bhi11g00336 . 192 461 ARID Transcription Factor Family AT1G20910 61.0 1.2e-89 327.8
Bhi09g02941 . 54 347 ARID Transcription Factor Family AT1G76110 68.2 2.2e-111 399.8
Bhi11g00337 . 207 527 ARID Transcription Factor Family AT1G76510 59.5 5.0e-108 389.0
Bhi11g00335 . 205 525 ARID Transcription Factor Family AT1G76510 59.5 5.0e-108 389.0
Bhi11g00334 . 176 496 ARID Transcription Factor Family AT1G76510 59.5 5.0e-108 389.0
Bhi11g00336 . 171 491 ARID Transcription Factor Family AT1G76510 59.5 5.0e-108 389.0
Bhi01g02835 CCT,ECH 1 773 ARID Transcription Factor Family AT3G43240 59.5 4.1e-267 918.3
Bhi01g02834 . 1 773 ARID Transcription Factor Family AT3G43240 59.5 4.1e-267 918.3
Bhi09g00270 . 2 767 ARID Transcription Factor Family AT3G43240 57.7 3.8e-257 885.2
Bhi09g00271 CCT,ECH 2 767 ARID Transcription Factor Family AT3G43240 57.7 3.8e-257 885.2
Bhi09g00272 . 2 767 ARID Transcription Factor Family AT3G43240 57.7 3.8e-257 885.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2302 PF00011 HSP20 6.00E-06 CL0190 Bhi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g00337 Bhi_Chr11 FPKM 3.828007 4.221878 11.933945 12.578096 53.651108 59.343536 58.731705 2.415256 2.227014 2.516444