Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00393 ATGGCGATGCCTTCGCGTGAAGCAATTGATACTTTCATCAGCGTCACAGGAGCCTCCGAAGCCATCGCCGTTCAAAGCCTAGAGGCACATGGTGCTGATCTCAATGCTGCTGTGAATGCATATTTCAATGAAGGAGATAGAAGTTCGTCTGTAAATGCACGTCAAACCTCTGTTTCTGGTGAATATGATTTCATGGACATTGATGATCCAGTTGAAGTTGAACCCCAGGGTCCTCCTCGGTCTCTTCTATCTACAGCTAGAGAGATAATGAATCCATTTTCATTACTTGATCAAAATCTTCGCCAGGGGTTCTTTGACCGCACCTCTGATTTTACAAGTTCTGCTCCAGTTGTTACTCATCCAAGAGAGTTGAGGGAGATTCCCATAGAATTTAGAGATGGTGATCGACCGTCTGGCCAATCTGGCCATGAGCCGACAATTGAGGATGTCACTGGGACTCTAGATGCCCATGGTCCAGAGGTTCATGGGACTGTAATAATTGATGATAGGGAAGATGAAGAACCTCCAGTTGCTTCTATAGCACATGCACCAGATTTAGAGCATCGGGCTGTTGCAAGTAACATATCTCGTGACAGAAATGTTATATCTCGTGCCTTTGATGGTGATGAATTTCAGGACAGAAATGATATTGAAGAAGAAATGATTCGTGCTGCAATTGAGGCTTCAAAGAAGGATGTTGGGCAAGCTTATCCTAGTGATCCCATAACTACTCACACTGATTTAAACAACCTTAGAACTCAAGAACATCTTTCTCACTTGAATAATTTTGAATTTCCACCTGCAGCTTCATCTATCAAGCCAGAGGAAGAAATCCCTCAGCGAGGGGAGAATATTGGAGGATCGAAAATAGAAGCTTCTAAGTTACCTGAGGTGGACGTGGAGCTGAGGAAAGTCAGAGCACTAAATGGAAGGATGGAAATGGGAAGCACGTCTGCTCAAGTTGAAGTTGAAGACCTAGAGGAAGATAATTTAGTTAGGCATCGATCTAAACGCAAGTCCTATGTTGAGCCTGCAAAGGGGGTTGAAGTAGATGTAGACCTTTCATCTAGTCCCAAGCATTCCGATACTAGTAATAATCCACAGCACAATGGGAATATCTTTCCTTCTGATGAGTGGGGTGGAATTTCTTCAGAGGAGCATGATGAAGCAGTCATGCTTGAGGCTGCCATGTTTGGTGGAGGTTCTGAAGGAAGTTCATATCGTTTTCCATCTGCACCTCATGAATTCATGAGAAATCAAGGTTCATATATGCAGCCAGCCCCTCGCCCTCCTTCACCCTCTTTAGTAGCTCAGCGTTTGATAAGGGAACAACAGGATGATGAGTATCTTGCAGCCTTACAAGCTGACAGGGAAAAAGAACTAAAGGCCATGGCAGAAGCTGAAGCTGTTCGTGAAAAAGAAAGACAAAGAGAGGAAGAATCCCGTCAGAAATTGGATGCTGAGAAGGAACTCGAAAGATGCTTGGCAGAAATAGAAGCTTCTCTTCCAAGTGAACCAAGAACAGATGATGAGAATGCTGTGACACTATTAGTGCGCATGCCAGATGGCAGTCGCCGTGGTCGTCGATTTCTCAAAACTGATAAGTTACAGTGTCTCATGGACTTCATTGATATTGGTAGAGTTGTCAAGCCTGGCTCCTATAGACTGGTGAGGCCATATCCTCGAAAAGCGTTCGGAGATGGGGAGGGTTCATTAACGTTGAATGAACTTGGACTTAACAGCAAACAAGAAGTTTTGTATCTGGAGTTGATTTAATTGCAACTGCATCGGTTCTGAACCACGGAAATTTAAATGACATATACATGAAAACTACATCGTCTTCCCTCTCTGTTGGAGCTTTGTTTGTGTGGATGAAACAGAGATGGCATTTGAAGGTATAAATAATGATCTTTGAAGTGCAAAATATTTGTTGATCCTTGTGCCGTGGAGGTTGTTGCCTGTATGCAGCTTTTCCTGTTAATACTATGATTTTAGAAATCATATTGAATTATGTGGCTGCTGCTTTGTACATGACTAGAGTTCAATTCATTTTAGACGCAAACGTTGCATATGTTAGATTGTTAGCCTAAATCTTTAGATAGCTCCACAAAATGGTTATTTTGGTTCTGA 2130 42.77 MAMPSREAIDTFISVTGASEAIAVQSLEAHGADLNAAVNAYFNEGDRSSSVNARQTSVSGEYDFMDIDDPVEVEPQGPPRSLLSTAREIMNPFSLLDQNLRQGFFDRTSDFTSSAPVVTHPRELREIPIEFRDGDRPSGQSGHEPTIEDVTGTLDAHGPEVHGTVIIDDREDEEPPVASIAHAPDLEHRAVASNISRDRNVISRAFDGDEFQDRNDIEEEMIRAAIEASKKDVGQAYPSDPITTHTDLNNLRTQEHLSHLNNFEFPPAASSIKPEEEIPQRGENIGGSKIEASKLPEVDVELRKVRALNGRMEMGSTSAQVEVEDLEEDNLVRHRSKRKSYVEPAKGVEVDVDLSSSPKHSDTSNNPQHNGNIFPSDEWGGISSEEHDEAVMLEAAMFGGGSEGSSYRFPSAPHEFMRNQGSYMQPAPRPPSPSLVAQRLIREQQDDEYLAALQADREKELKAMAEAEAVREKERQREEESRQKLDAEKELERCLAEIEASLPSEPRTDDENAVTLLVRMPDGSRRGRRFLKTDKLQCLMDFIDIGRVVKPGSYRLVRPYPRKAFGDGEGSLTLNELGLNSKQEVLYLELI 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9343251 9348936 + XM_039047922.1 Bhi11g00393 49105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00393 591 SUPERFAMILY Ubiquitin-like 472 587 IPR029071 -
Bhi11g00393 591 CDD UBX 515 589 - -
Bhi11g00393 591 Gene3D - 510 590 - -
Bhi11g00393 591 MobiDBLite consensus disorder prediction 357 373 - -
Bhi11g00393 591 MobiDBLite consensus disorder prediction 332 382 - -
Bhi11g00393 591 PANTHER OS09G0525600 PROTEIN 314 591 - -
Bhi11g00393 591 PANTHER OS09G0525600 PROTEIN 1 235 - -
Bhi11g00393 591 Coils Coil 450 497 - -
Bhi11g00393 591 MobiDBLite consensus disorder prediction 132 159 - -
Bhi11g00393 591 ProSiteProfiles UBX domain profile. 509 587 IPR001012 GO:0005515
Bhi11g00393 591 MobiDBLite consensus disorder prediction 332 346 - -
Bhi11g00393 591 PANTHER FAS-ASSOCIATED PROTEIN 314 591 - -
Bhi11g00393 591 PANTHER FAS-ASSOCIATED PROTEIN 1 235 - -
Bhi11g00393 591 SMART ubx_3 506 590 IPR001012 GO:0005515
Bhi11g00393 591 CDD UBA_Ubx1_like 6 42 - -
Bhi11g00393 591 SUPERFAMILY UBA-like 5 44 IPR009060 GO:0005515
Bhi11g00393 591 Pfam UBX domain 510 589 IPR001012 GO:0005515
Bhi11g00393 591 Gene3D - 5 45 - -
Bhi11g00393 591 Pfam UBA-like domain 6 47 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00393 - - - csv:101208817 1018.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00416 Bhi-Chr1:6974360 Bhi11g00393 Bhi-Chr11:9343251 2.90E-11 dispersed
Bhi04g02063 Bhi-Chr4:55280950 Bhi11g00393 Bhi-Chr11:9343251 7.70E-09 dispersed
Bhi11g00393 Bhi-Chr11:9343251 Bhi12g00100 Bhi-Chr12:3237393 1.08E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g368 Blo02g01097 Blo03g00196 . . . . . . . . . . . . . . . Bhi11g00393 . . . Hepe06g1233 . . Cla10g00354 Cam10g0366 Cec10g0384 Cco10g0379 Clacu10g0370 Cmu10g1207 Cre10g0622 . . . . . . . . . . . . . . . . . . . Cma06g00707 . . Car16g00956 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004108 2 1 2 2 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 2 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g00393 Bhi_Chr11 FPKM 15.135965 18.904362 9.930671 15.025003 12.999107 14.631257 11.414538 16.11128 15.4038 14.320403