Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00395 TTGAAAGAAAAAAATTTGGCACAAAAGTCCACTCATTCCACAACCAAGATTCTTCCTTCCATTTTAAAATAATCTCCAATTCCCCAAATATCTACTCATCATCCTCTCCTACTTTCCGTCCATATCATTCCTCGCTGTATTCCTTCACTTTCTAACAAAACAAACACCTCTTGGCTCTCAGTTTTCTCAAAATCTGACAATTCTAAGCAACCCCATTACCTTGATTCTTCCTTTTTCCCTTATATGAACAACCCCTTTTGATTATTTTCTCATGATCTTCTTCCTTCTCTAATGGGTCTTAATATCTCTGTTTTTTTCCGCCTCCATATTGGGTCTCAGCCCTCGCCGCCGCCGCCGTTTCCCGGTCTCGGAGACTTGCCGGAGAGCTGTGCGGCGGATGTTTTGAAGTATTTGAGTCCGGTGGAGATTTGTAAACTTGCCAAGATGAATCGGGCTTTTCGTGGGGCGTCTTGGGCTGATTTCGTTTGGGAGTCCAAATTGCCTTCTAATTATAGGGTTCTTGTTCAACGACTGATTGGAGATGTTGGTTTGACTATGAGTAAAAGAGAGATTTATACGAGACTTTGTCAGCAGAATCGATTAGATGGTGGAAATAAGAATGTTTGGCTGGATAAATATTCAGGTGGTCTTTGCTTGTCGATTTCTTCTATGGACTTGAGGATTACTGGGATTGATGATCGGAGGTATTGGAATCGTATCTCGACTGAAGAATCGAGATTCCACAATGTTGCGTATCTTCAGCAAATATGGTGGTTTGAAGTTGGTGGAGAGGTAGAGTTTCCGTTTCCACCAGGAACTTACAGCCTATACTTCAGATTGCAATTGGGTCGGACATCGAAGAGGTTTGGCCGTCGAATCTATAACCTCGAGCACGTTCATGGTTGGAACATAAAGCCTGTGCAATTCCAGCTTTGGACTTCAGATGGTCAGCATGCCAAAACTCAATGCTATTTAGACGAAGCTGGGAAATGGACTCTGCATCATGCAGGTAACTTCAACGTCAATGCTCGAAATGAATCGATAAGGATCAAATTCTCTATGACTCAGATTGACTGCACGCACACAAAAGGCGGTCTCTGTTTAGATTCAGTGCTGATTTACCCAGTTGAGTATGAACAGAGATCCAAGCGTCGTTGACTCGCTCGGTCTGGATTTTGTTATAGGTAGAAATTGTGTAAAAATACATAGCTGAGTGAGGTTATGAAAGCTTCTCAAATGACTGGCTTTATTTTTTCTAAGCCTATAGTTATTTGTGTTGGAAATGAGGCAATGTTTACTTAAAATGGATATTTGATTTGTTTCATTAATGTGTATTTATGGGCAGATCTCATGTGTTAGTGAATAAGAAGGGTTGTGTCATAGTGGTTCTTAAATTAGTTATTTTGCTTTTGTTTCCATAAACACTACTATTTGAAAACAATGTCTCAGTGACTAATTTTTGCT 1464 40.44 MGLNISVFFRLHIGSQPSPPPPFPGLGDLPESCAADVLKYLSPVEICKLAKMNRAFRGASWADFVWESKLPSNYRVLVQRLIGDVGLTMSKREIYTRLCQQNRLDGGNKNVWLDKYSGGLCLSISSMDLRITGIDDRRYWNRISTEESRFHNVAYLQQIWWFEVGGEVEFPFPPGTYSLYFRLQLGRTSKRFGRRIYNLEHVHGWNIKPVQFQLWTSDGQHAKTQCYLDEAGKWTLHHAGNFNVNARNESIRIKFSMTQIDCTHTKGGLCLDSVLIYPVEYEQRSKRR 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9391907 9394356 + XM_039050074.1 Bhi11g00395 49107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00395 288 PANTHER F-BOX PROTEIN PP2-A15 1 286 - -
Bhi11g00395 288 ProSiteProfiles F-box domain profile. 23 69 IPR001810 GO:0005515
Bhi11g00395 288 SUPERFAMILY F-box domain 14 100 IPR036047 GO:0005515
Bhi11g00395 288 Pfam Phloem protein 2 121 278 IPR025886 -
Bhi11g00395 288 PANTHER F-BOX PROTEIN PP2-A12 1 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00395 - - - csv:101209307 545.428
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g00395 Bhi-Chr11:9391907 Bhi11g01999 Bhi-Chr11:57087267 3.73E-105 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g316 . . . . . Bpe07g00105 . . . . . . . . . . . Bhi11g00395 . . . . . . . . . . . . . . . . Cone9ag0787 Lsi07g01416 Csa05g00148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001664 6 3 1 3 3 2 3 2 2 2 2 2 2 2 2 3 2 3 3 2 2 2 2 2 2 2 1 3 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g00395 Bhi_Chr11 FPKM 66.902122 79.285782 83.345421 86.183479 30.179434 26.965286 29.182419 108.314354 107.393677 111.926643