Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00447 TTTATTTTTTCCTTCTCCATTGGTAGCATTTAGCAACTTGGCAACTTTCCCATCCTATTCCATCCCCTACAAAAATCTCACACCCATATTATTCACCTCTTCACTTTACCAATCCAGAAACCCTAATTCCTCCTTCCCTTTCCATGGCGGATTCCGACAACGATTCCGGCGGCGGCTGCCAGAAATCTCCCTCTCCACGTGAGCACGACCGCCTCCTCCCGATCGCCAACGTCGGCCGGATCATGAAAAAGGCTCTCCCTGGGAACGCCAAGATCTCAAAAGACGCCAAAGAAACCGTCCAAGAATGCGTCTCTGAGTTCATCAGTTTCGTCACCGGCGAAGCCTCCGAGAAGTGCCACAACGAGAAGCGAAAGACGATCAACGGCGACGATTTGCTCTGGGCTATGGCGACCTTAGGGTTCGAGGACTATGTCGATCCTCTCAAGTTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCGTCACGTGACTCCGCCAACGCCGCCGCTAACTCCGCCGCAGCTGCCAATAGTACGTTTTTCGACGGCGGTGGGGAATTCGGGGATGGGATGGGGATGACGATGATGCCTCCGAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTACTACTACGGGTCGGCCCAGGTAGATGGCCCAGCCCGGCCCATTGGCTTTGATTGGGCCCAGCACTATACACTACTACATTCATTACCATTACCAATCACCATGACGGCGAAATCTCCATTTTATCCTCCATAAAATGAAGATGGGCAGCTGATGGAGGTTTAAGTCTTTTTAATTTTATAAAATTATAATGACGTAGATAAATAATAATAATAGGCCATGAATTTAATCTATTTTTATTTAATAAATATGCATTTTATAATTTTTATAACAATTATAAATTATGTTGAATCGTTACTTTGCTTCCTAAA 963 46.73 MADSDNDSGGGCQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASEKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKFYLQRFREIEGERTTLASRDSANAAANSAAAANSTFFDGGGEFGDGMGMTMMPPNVYGSNGPRWDGPGFTTTGRPR 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10813050 10814012 + XM_039049142.1 Bhi11g00447 49159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00447 177 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 154 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bhi11g00447 177 Gene3D Histone, subunit A 12 137 IPR009072 GO:0046982
Bhi11g00447 177 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 154 - -
Bhi11g00447 177 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bhi11g00447 177 SUPERFAMILY Histone-fold 22 122 IPR009072 GO:0046982
Bhi11g00447 177 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Bhi11g00447 177 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Bhi11g00447 177 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Bhi11g00447 177 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Bhi11g00447 177 MobiDBLite consensus disorder prediction 1 23 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00447 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - csv:101204640 318.931
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g02094 Bhi-Chr2:56760236 Bhi11g00447 Bhi-Chr11:10813050 1.71E-37 dispersed
Bhi10g01300 Bhi-Chr10:30789337 Bhi11g00447 Bhi-Chr11:10813050 8.42E-63 dispersed
Bhi10g01301 Bhi-Chr10:30789337 Bhi11g00447 Bhi-Chr11:10813050 8.42E-63 dispersed
Bhi11g00447 Bhi-Chr11:10813050 Bhi11g02147 Bhi-Chr11:60104399 1.16E-56 dispersed
Bhi11g00447 Bhi-Chr11:10813050 Bhi11g02146 Bhi-Chr11:60103939 8.39E-57 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g00479 . 39 178 CCAAT-HAP3 Transcription Factor Family AT5G47670 67.9 1.1e-48 191.0
Bhi10g01300 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 1.5e-37 154.1
Bhi10g01301 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 1.5e-37 154.1
Bhi11g00479 . 37 200 CCAAT-HAP3 Transcription Factor Family AT1G21970 60.0 2.0e-50 196.8
Bhi01g02444 . 11 139 CCAAT-HAP3 Transcription Factor Family AT1G21970 52.6 4.3e-37 152.5
Bhi10g01300 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 3.7e-56 215.3
Bhi10g01301 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 3.7e-56 215.3
Bhi11g00447 . 1 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 79.3 3.7e-48 188.7
Bhi01g02444 . 30 136 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 1.5e-46 183.3
Bhi11g02146 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.5 6.5e-45 177.9
Bhi11g02147 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.5 6.5e-45 177.9
Bhi07g01026 . 14 119 CCAAT-HAP3 Transcription Factor Family AT4G14540 76.4 3.6e-43 172.2
Bhi07g01026 . 1 120 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.3 1.9e-49 193.0
Bhi11g02146 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 4.6e-48 188.3
Bhi11g02147 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 4.6e-48 188.3
Bhi10g01300 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 2.9e-42 169.1
Bhi10g01301 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 2.9e-42 169.1
Bhi11g00447 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.3 7.1e-41 164.5
Bhi01g02444 . 17 123 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.9 9.2e-41 164.1
Bhi10g01300 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 6.9e-39 157.9
Bhi10g01301 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 6.9e-39 157.9
Bhi11g00447 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 9.0e-39 157.5
Bhi01g02444 . 33 141 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 4.5e-38 155.2
Bhi11g02146 . 24 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 65.1 1.4e-36 150.2
Bhi11g02147 . 24 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 65.1 1.4e-36 150.2
Bhi11g02146 . 1 173 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.4 1.1e-63 240.4
Bhi11g02147 . 1 149 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.2 2.2e-59 226.1
Bhi07g01026 . 7 168 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.0 3.6e-57 218.8
Bhi10g01300 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 3.5e-44 175.6
Bhi10g01301 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 3.5e-44 175.6
Bhi11g00447 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 66.7 6.1e-41 164.9
Bhi01g02444 . 32 137 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 1.0e-40 164.1
Bhi01g02444 . 20 134 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 5.6e-44 175.3
Bhi10g01300 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 9.6e-44 174.5
Bhi10g01301 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 9.6e-44 174.5
Bhi11g02146 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.5 9.6e-44 174.5
Bhi11g02147 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.5 9.6e-44 174.5
Bhi11g00447 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 79.2 1.7e-40 163.7
Bhi07g01026 . 27 127 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.3 1.9e-39 160.2
Bhi10g01300 . 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 1.4e-51 200.3
Bhi10g01301 . 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 1.4e-51 200.3
Bhi11g00447 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.6 6.7e-49 191.4
Bhi01g02444 . 28 133 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 2.2e-44 176.4
Bhi07g01026 . 27 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 75.2 8.5e-44 174.5
Bhi11g02146 . 11 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.1 1.1e-43 174.1
Bhi11g02147 . 11 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.1 1.1e-43 174.1
Bhi11g02146 . 12 173 CCAAT-HAP3 Transcription Factor Family AT3G53340 75.4 1.3e-62 236.9
Bhi11g02147 . 12 159 CCAAT-HAP3 Transcription Factor Family AT3G53340 79.1 2.1e-60 229.6
Bhi07g01026 . 12 167 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.0 6.2e-57 218.0
Bhi10g01300 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 7.1e-45 177.9
Bhi10g01301 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 7.1e-45 177.9
Bhi11g00447 . 4 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.9 1.4e-40 163.7
Bhi01g02444 . 21 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 1.8e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2311 PF00808 CBFD_NFYB_HMF 8.90E-28 CL0012 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g00447 Bhi_Chr11 FPKM 2.038081 1.76573 0.648962 0.423428 11.360929 13.237556 12.750563 0.407772 0.435363 0.407724