Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00457 CTCCAAACTAAAATCCCCTTCTCCATTTCTCTGCCGGATTCTGTCGCCGATCAATTCAAGATATGTTCTGAAATCGCTTCCGCTATTAAGGATCTGGGTTTCATTGGAGATATGAGCTTCCATAAGATTACATGTGTTGCTTACAACAGTTCTTGTATCCATCTGAAGAGGACTTGTATAAGTTGATAAGATTCTTGGTGGAGAGGCTTCCTGAAGCTTCAGATGGAAAGTCTAAGGTTTTGGAAGATGGTGATGGTAGAAAAGAAACGAAAGCCGACACTTCCAAATGCTACTATGTGGAGGACCCATCAGACAAGGTCAATACTGATGATTCTGTTTTTACCCATCAGAAGGTTGAGAACAAACGTGCTGATCTTAATATTATTTCTGAAGAGACAAAATCGTCAAATTCCATCGTTGGTAGATTCTCTGATTTATGTCTCGTCCAACAAAGCTTGGGTGAAGCAGCTATGGCCGATAACCTTGTTAATGCTCCCAAGGATCAGTCTGAGGTTTCTGGAAATGAATCGGTTGCACTGCAGGGGAATAATAGACATGAAGTTGGTTCTTACACTGAGAAGACCTGTGAAGATCAAGAGATCAGACCTTTGGAAGAGGTCACTTCGAAGGCGTCTGAATTAGAGCATCTTCAAGTGGAGTTGGAAAGGTTGAAGGCAGTGACCAGAATTGTATTCGATGAAAATCAGTCGATTGAATTCCATCTTCAGCAACTGGAGGAGCAAATAAACTCTAGAAACCTGAATCTTCGTGCAATGAAGTCACAGTGGGATGCAGAGAGGGAGCTTTTAGAAAATAAAAGGCAAAGTCTACAAGATTCACTATGCGCAAGTAATCCAAAGGCTCAAGAAAAGCTGCAAAAATTGAGGGAGTTTGAATCGGAAAAGAAGCTCATTGAGTCGGAAATCAGGAGGCGGGAGGAAGAGAATTCTAATCTCGCTACAGATATTAAGAAGCAGCCCAAACAATTACCGAGACGATCCTATATCAATAGAGTAAAGGAGATCACAAAAAACAGCCGGAAACAAGATGCCGACATTGATCGAATCCTCAAAGAAACTAGAGAGCTTCAGCTAGAAAGTAACAACATTCAAGAACGCCTCCATAGAACCTACGCAGTTGTGGATGAGCTAGTTTTCAGCAGGGAAGCAAAAAAAGATGGCATAGGCAAGCAAGCACACAAGCTTTTGACTAGTATCCATGAGAACTTCGGCGAGATCTCGAACAAAATCCTCTCTACGGATAGACTAAGAAGAGAAACTGCAGAATACGAGAAGAAGATAGCAGCCTCAGCATCCCGAAGTTTGAATTTTACCAAATTACAAGCTGATCTGGATGCTATCAGGAGGGAAAATAGTTACCTAGAGCAACATCTTTGCTATAAAAAAACCCATTGACCAAGTGTAGAATATTTTCTGGAAATTTTTTTGTTTAGTGTAAATCATTCATCATGCTTTTTGCAGCAATTAAATACTATTGTAAAGGAGAAAATAATACAATACAAATGACATCCATCTGCTACTACTAAAGTGGTTGTTCATTAATTAGTTGGAATGTGATGCCTTGTGAAATAAGGCTTCTACTT 1603 40.17 MCCLQQFLYPSEEDLYKLIRFLVERLPEASDGKSKVLEDGDGRKETKADTSKCYYVEDPSDKVNTDDSVFTHQKVENKRADLNIISEETKSSNSIVGRFSDLCLVQQSLGEAAMADNLVNAPKDQSEVSGNESVALQGNNRHEVGSYTEKTCEDQEIRPLEEVTSKASELEHLQVELERLKAVTRIVFDENQSIEFHLQQLEEQINSRNLNLRAMKSQWDAERELLENKRQSLQDSLCASNPKAQEKLQKLREFESEKKLIESEIRRREEENSNLATDIKKQPKQLPRRSYINRVKEITKNSRKQDADIDRILKETRELQLESNNIQERLHRTYAVVDELVFSREAKKDGIGKQAHKLLTSIHENFGEISNKILSTDRLRRETAEYEKKIAASASRSLNFTKLQADLDAIRRENSYLEQHLCYKKTH 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10995323 10998917 + XM_039047253.1 Bhi11g00457 49169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00457 427 Coils Coil 198 236 - -
Bhi11g00457 427 Pfam Coiled-coil domain-containing protein 22 159 392 IPR008530 -
Bhi11g00457 427 Coils Coil 244 271 - -
Bhi11g00457 427 Coils Coil 160 183 - -
Bhi11g00457 427 PANTHER JM1 PROTEIN 4 38 IPR008530 -
Bhi11g00457 427 PANTHER JM1 PROTEIN 119 422 IPR008530 -
Bhi11g00457 427 Coils Coil 309 329 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00457 K23343 CCDC22; coiled-coil domain-containing protein 22 - csv:101210296 683.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g00455 Bhi-Chr11:10995310 Bhi11g00457 Bhi-Chr11:10995323 0 dispersed
Bhi11g00456 Bhi-Chr11:10995310 Bhi11g00457 Bhi-Chr11:10995323 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g709 . . . . Bpe09g00115 . . Bma13g01126 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00412 . Cme06g02760 . . . Bda12g00977 . . . . . . . . . . . Cpe14g00777 . Bhi11g00457 . . . . . . . . . . . . . . . Chy06g01900 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009968 1 5 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g00457 Bhi_Chr11 FPKM 20.86278 22.043087 24.199581 23.522743 14.954512 13.920041 16.213869 19.453167 18.901924 23.361023