Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00458 TTCATTTCTTGCTTGTTTGTATTCCTTTTATTGGGTGAATTTCCTCAATCATCCATCAAAATAAACTTTTCTTTTTAAGGGTCTCTTTCTTTTATTACAAGAGATTGCCATTCCATCATTTTTGCTGCTCCATTTCTTCCATTGATGTGTGATTTCAACATAACTCTGTTTACACAGAAATGGGGTTTCTTGATTCTTTGTTTGGAAGAGATTCAAGAAAGTTTATCAAAAGAAAAGACAGCGATGCAGGTGAAGCAGAAGTTCTCATACTCTATAAATCCACAGGCCGAGCGCTCGAGGAAATTAGAGGTTCGCTTTATAATGAACTACGAATGTCGGATGGGGCGAAACGCCAACAGCAACGATATTGCGGGCCTGTTGTTGCAATGACATTCAATTTCATGGTTGCTGTTGGAATTATAATGGCAAACAAATTAGTGATGGGAAGAGTTGGATTTAACTTCCCAATATTTCTCACATCAATCCATTACACTATTGCTTGGTTTCTACTAGCAATTTTCAAGGCACTTTCTTTGCTTCCTGTTTCTCCTCCTACCAAAACCACTCCCTTCTCCTCTCTTTTTGCCTTAGGCGTTGTCATGGCTTTTGCTTCAGGTCTTGCCAACACAAGTCTAAAGCATAACAGTGTTGGATTCTACCAGATGGCTAAAATTGCAGTAACTCCCACCATTGTATTTTCAGAGTTCATTCTCTTCAAGAAAACCATTTCTTATAAAAAGGTATTGGCTTTGTCTGTTGTCTCCGTTGGCGTGGCGATTGCGACCGTAACGGATTTAGAGTTCAACGTATTCGGTGCTTTGATCGCAATCGCTTGGATAATCCCAAGTGCCATAAACAAAATTCTGTGGTCGAATCTTCAACAACAAGCGAGTTGGACCGCGTTAGCGTTGATGTGGAAAACTACTCCAATTACAATATTTTTCTTACTTGCTCTCATGCCTTGGCTGGATCCACCAGGAGTTTTATCCTTTAATTGGGATCTTAGCAGTTCAACTGCTATTTTGATATCAGCTCTTCTTGGTTTTCTCTTGCAATGGTCCGGAGCTTTGGCACTTGGTGCAACCTCTGCAACATCTCATGTTGTTCTGGGACAGTTCAAGACTTGTGTGATTCTACTCGGAAGCTATTTTGTTTTCGGGTCCGATCCCGGGTTCGTGAGCATTTGCGGAGCGGTTACAGCTCTCGGCGGAATGTCTGCTTATACATCCCTTAATCTGCAGCAACAACTTGACAACAAGCAGGCGATACCGAAACCCGAAAACAGTATTGTAGAAGATGCTCCAAAGTCAGATGTACAAAATTCTGATGTTGCTGTATAGAGATTGAATGAACCATCTGAGCTACCATATGAGTTCTATAGTTTTTTTTTTAATGGTAAATTGAGGTAGAAAATATCTAATTTCTTCCTATAATACTGATAACAATTTTATAGAGATATGCATACTATTCCTTTTGAAACA 1481 39.7 MGFLDSLFGRDSRKFIKRKDSDAGEAEVLILYKSTGRALEEIRGSLYNELRMSDGAKRQQQRYCGPVVAMTFNFMVAVGIIMANKLVMGRVGFNFPIFLTSIHYTIAWFLLAIFKALSLLPVSPPTKTTPFSSLFALGVVMAFASGLANTSLKHNSVGFYQMAKIAVTPTIVFSEFILFKKTISYKKVLALSVVSVGVAIATVTDLEFNVFGALIAIAWIIPSAINKILWSNLQQQASWTALALMWKTTPITIFFLLALMPWLDPPGVLSFNWDLSSSTAILISALLGFLLQWSGALALGATSATSHVVLGQFKTCVILLGSYFVFGSDPGFVSICGAVTALGGMSAYTSLNLQQQLDNKQAIPKPENSIVEDAPKSDVQNSDVAV 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11000331 11004507 + XM_039047504.1 Bhi11g00458 49170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00458 386 PANTHER OS06G0297600 PROTEIN 26 367 - -
Bhi11g00458 386 MobiDBLite consensus disorder prediction 365 386 - -
Bhi11g00458 386 PANTHER SOLUTE CARRIER FAMILY 35 26 367 - -
Bhi11g00458 386 Pfam Triose-phosphate Transporter family 71 348 IPR004853 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00458 - - - csv:101203997 714.916
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g00458 Bhi-Chr11:11000331 Bhi11g00461 Bhi-Chr11:11000636 0 dispersed
Bhi11g00458 Bhi-Chr11:11000331 Bhi11g00459 Bhi-Chr11:11000331 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g708 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00413 . Cme06g02761 . Blo10g00874 . . . . . . . . . . . . . Cpe14g00778 . Bhi11g00458 . . . . . . . . . . . . . . . Chy06g01899 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001987 2 5 2 0 1 2 3 2 2 2 2 2 3 2 2 2 2 3 3 2 2 2 2 2 1 2 1 4 4 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g00458 Bhi_Chr11 FPKM 21.251177 25.516893 39.981819 40.89323 37.736515 39.681065 34.711239 56.539433 56.723564 54.476345