Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi11g00479 TCTTATTTTCATTGTCACTCTCATCTTTTAGAGAGAGAATATAAAGAAGAAGAAGGGCAATTATGGAATGTGGAGGAACTGCACAAGGAGGAGGAGATGGCTTCCATAGCTATAAAAGGCAACATCCGAAACAAACTTCTGCATTGAACATGTTGCTGACCCCAAACAAGCCAACCTCCGCCAACAACACTCCAAACAGCAATCACCACCTCTCTAACGGTGGAGCCGCCACCGGCAACTCCCCAGCCACTAGCCCCATCCCGGTCGCTACCGCCACCAACAATGAGCAAAACCAACAATGCATGGTGCGAGAGCAAGACCAGTACATGCCGATAGCTAATGTGATACGCATCATGCGACGGATCTTACCCTCCCATGCAAAGATATCGGACGACGCCAAAGAGACCATCCAAGAATGTGTGTCAGAGTACATTAGCTTCATCACTGGCGAGGCAAACGAACGATGCCAACGGGAGCAACGCAAGACAGTGACGGCGGAGGATGTCCTTTGGGCTATGGGGAAGCTAGGTTTTGATGATTATATTGAACCGCTAACTGTTTTCCTCAACCGCTATCGTGAGTCGGAAAGTGACCGAATTCGCACTGAGCCAATCTTGAGGCGCAATGTGGATTACGGGCCACAAGTGGGAATGATGCCACCGTACGGGCAGGCATTTCAGATAGGGCATGTCCCAGCAGGGATGTTCGATGCAATGGGCGGATACTATAACGGAGGCGGGAGCGGTGGCCCGAGCGCCGGAAACGGTAGCCAGCTTTGATATGAGTTTGAAGTAGGGTACTAATTTGAAATGAAAGCTATATATATAATGAATAAATATCAAAAAGCAACAAGTGATTATAACCCATTTGTTCTAGCTAGGTTTGATGGTGGTGGTGGCTGGCTGGTTGGCTGCTGTGGTTTGTATGGCTGCAAGATAGTCTTTGCTAACTTCTCTCTTTCACTTTTTAAATTCTTGTTATTCCCCAAAAACTTTCTTGCATC 1003 47.66 MECGGTAQGGGDGFHSYKRQHPKQTSALNMLLTPNKPTSANNTPNSNHHLSNGGAATGNSPATSPIPVATATNNEQNQQCMVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMMPPYGQAFQIGHVPAGMFDAMGGYYNGGGSGGPSAGNGSQL 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11348114 11352430 + XM_039049891.1 Bhi11g00479 49191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi11g00479 238 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 89 152 IPR003958 -
Bhi11g00479 238 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 56 205 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bhi11g00479 238 SUPERFAMILY Histone-fold 85 178 IPR009072 GO:0046982
Bhi11g00479 238 MobiDBLite consensus disorder prediction 32 69 - -
Bhi11g00479 238 PRINTS CCAAT-binding transcription factor subunit A signature 116 134 - -
Bhi11g00479 238 PRINTS CCAAT-binding transcription factor subunit A signature 135 153 - -
Bhi11g00479 238 PRINTS CCAAT-binding transcription factor subunit A signature 154 172 - -
Bhi11g00479 238 Gene3D Histone, subunit A 75 189 IPR009072 GO:0046982
Bhi11g00479 238 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 56 205 - -
Bhi11g00479 238 ProSitePatterns NF-YB/HAP3 subunit signature. 119 135 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi11g00479 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - csv:116402762 384.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi11g00479 Bhi-Chr11:11348114 Bhi11g02147 Bhi-Chr11:60104399 1.22E-46 dispersed
Bhi11g00479 Bhi-Chr11:11348114 Bhi11g02146 Bhi-Chr11:60103939 1.81E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g659 . . Bda07g00410 . Bpe09g00129 . Bma10g00590 Bma13g01113 . Cmo06g00687 . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1366 Cone12ag1312 . Csa03g00427 . . . Blo10g00864 . Bda12g00962 Bpe11g00587 . . Bma14g00682 . . . . . . . . . Bhi11g00479 . . . . . . . . . . . . . Lsi05g00494 . Chy06g01888 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g00479 . 39 178 CCAAT-HAP3 Transcription Factor Family AT5G47670 67.9 1.1e-48 191.0
Bhi10g01300 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 1.5e-37 154.1
Bhi10g01301 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 1.5e-37 154.1
Bhi11g00479 . 37 200 CCAAT-HAP3 Transcription Factor Family AT1G21970 60.0 2.0e-50 196.8
Bhi01g02444 . 11 139 CCAAT-HAP3 Transcription Factor Family AT1G21970 52.6 4.3e-37 152.5
Bhi10g01300 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 3.7e-56 215.3
Bhi10g01301 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 3.7e-56 215.3
Bhi11g00447 . 1 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 79.3 3.7e-48 188.7
Bhi01g02444 . 30 136 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 1.5e-46 183.3
Bhi11g02146 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.5 6.5e-45 177.9
Bhi11g02147 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.5 6.5e-45 177.9
Bhi07g01026 . 14 119 CCAAT-HAP3 Transcription Factor Family AT4G14540 76.4 3.6e-43 172.2
Bhi07g01026 . 1 120 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.3 1.9e-49 193.0
Bhi11g02146 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 4.6e-48 188.3
Bhi11g02147 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 4.6e-48 188.3
Bhi10g01300 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 2.9e-42 169.1
Bhi10g01301 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 2.9e-42 169.1
Bhi11g00447 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.3 7.1e-41 164.5
Bhi01g02444 . 17 123 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.9 9.2e-41 164.1
Bhi10g01300 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 6.9e-39 157.9
Bhi10g01301 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 6.9e-39 157.9
Bhi11g00447 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 9.0e-39 157.5
Bhi01g02444 . 33 141 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 4.5e-38 155.2
Bhi11g02146 . 24 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 65.1 1.4e-36 150.2
Bhi11g02147 . 24 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 65.1 1.4e-36 150.2
Bhi11g02146 . 1 173 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.4 1.1e-63 240.4
Bhi11g02147 . 1 149 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.2 2.2e-59 226.1
Bhi07g01026 . 7 168 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.0 3.6e-57 218.8
Bhi10g01300 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 3.5e-44 175.6
Bhi10g01301 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 3.5e-44 175.6
Bhi11g00447 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 66.7 6.1e-41 164.9
Bhi01g02444 . 32 137 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 1.0e-40 164.1
Bhi01g02444 . 20 134 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 5.6e-44 175.3
Bhi10g01300 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 9.6e-44 174.5
Bhi10g01301 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 9.6e-44 174.5
Bhi11g02146 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.5 9.6e-44 174.5
Bhi11g02147 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.5 9.6e-44 174.5
Bhi11g00447 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 79.2 1.7e-40 163.7
Bhi07g01026 . 27 127 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.3 1.9e-39 160.2
Bhi10g01300 . 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 1.4e-51 200.3
Bhi10g01301 . 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 1.4e-51 200.3
Bhi11g00447 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.6 6.7e-49 191.4
Bhi01g02444 . 28 133 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 2.2e-44 176.4
Bhi07g01026 . 27 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 75.2 8.5e-44 174.5
Bhi11g02146 . 11 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.1 1.1e-43 174.1
Bhi11g02147 . 11 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.1 1.1e-43 174.1
Bhi11g02146 . 12 173 CCAAT-HAP3 Transcription Factor Family AT3G53340 75.4 1.3e-62 236.9
Bhi11g02147 . 12 159 CCAAT-HAP3 Transcription Factor Family AT3G53340 79.1 2.1e-60 229.6
Bhi07g01026 . 12 167 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.0 6.2e-57 218.0
Bhi10g01300 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 7.1e-45 177.9
Bhi10g01301 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 7.1e-45 177.9
Bhi11g00447 . 4 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.9 1.4e-40 163.7
Bhi01g02444 . 21 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 1.8e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006157 1 1 0 1 1 1 0 1 1 1 1 1 2 1 1 3 1 2 2 1 5 1 2 1 1 1 1 1 1 0 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
2312 PF00808 CBFD_NFYB_HMF 3.00E-25 CL0012 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi11g00479 Bhi_Chr11 FPKM 15.337679 16.552265 10.697548 10.407848 11.128609 11.849433 12.533117 14.149859 15.155724 15.423737